Wall clock time and date at job start Mon Mar 30 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34635 * 126.10556 * 2 1 4 4 C 1.31035 * 108.61901 * 180.02562 * 3 2 1 5 5 N 1.38344 * 125.71072 * 179.97438 * 4 3 2 6 6 C 1.38186 * 120.00096 * 179.97438 * 5 4 3 7 7 N 1.29627 * 125.01962 * 179.71788 * 6 5 4 8 8 C 1.33695 * 115.86321 * 179.84948 * 7 6 5 9 9 C 1.41057 * 122.83358 * 180.22635 * 8 7 6 10 10 H 1.08003 * 119.99820 * 174.30257 * 9 8 7 11 11 C 1.39601 * 120.00446 * 354.29934 * 9 8 7 12 12 N 1.31091 * 119.99987 * 6.19950 * 11 9 8 13 13 Si 1.86800 * 120.00210 * 186.19852 * 11 9 8 14 14 H 1.48505 * 109.47113 * 94.98654 * 13 11 9 15 15 H 1.48505 * 109.46959 * 214.98026 * 13 11 9 16 16 H 1.48494 * 109.47181 * 334.98272 * 13 11 9 17 17 C 1.37754 * 114.32842 * 0.43889 * 8 7 6 18 18 S 1.70967 * 108.97553 * 359.76847 * 17 8 7 19 19 O 1.34225 * 108.58452 * 359.97438 * 4 3 2 20 20 C 1.34174 * 126.10543 * 180.02562 * 2 1 3 21 21 C 1.50699 * 126.36326 * 359.97438 * 20 2 1 22 22 H 1.08992 * 109.47188 * 89.98029 * 1 2 3 23 23 H 1.09009 * 109.46891 * 209.97241 * 1 2 3 24 24 H 1.09002 * 109.47083 * 329.97260 * 1 2 3 25 25 H 0.97003 * 119.99552 * 359.97438 * 5 4 3 26 26 H 0.97002 * 120.00327 * 180.02562 * 12 11 9 27 27 H 1.08001 * 125.51245 * 179.79179 * 17 8 7 28 28 H 1.08996 * 109.47800 * 89.99443 * 21 20 2 29 29 H 1.09001 * 109.47104 * 209.99826 * 21 20 2 30 30 H 1.09006 * 109.47294 * 329.99751 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3004 1.0878 0.0000 4 6 3.5502 0.6940 -0.0006 5 7 4.6579 1.5228 -0.0012 6 6 5.9280 0.9785 -0.0012 7 7 7.0299 1.6612 -0.0071 8 6 8.1593 0.9458 -0.0028 9 6 9.4397 1.5378 -0.0034 10 1 10.3203 0.9200 0.0931 11 6 9.5686 2.9222 -0.1288 12 7 8.5011 3.6831 -0.1236 13 14 11.2623 3.6905 -0.3038 14 1 11.5702 3.8873 -1.7432 15 1 11.2848 5.0027 0.3911 16 1 12.2782 2.7924 0.3014 17 6 7.9671 -0.4182 -0.0023 18 16 6.2885 -0.7430 -0.0011 19 8 3.5759 -0.6480 -0.0003 20 6 2.2976 -1.0840 -0.0005 21 6 1.8437 -2.5210 -0.0006 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8903 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 4.5429 2.4860 -0.0017 26 1 8.5906 4.6450 -0.2111 27 1 8.7500 -1.1621 -0.0023 28 1 1.7338 -2.8674 -1.0282 29 1 2.5831 -3.1357 0.5128 30 1 0.8858 -2.5995 0.5136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259952097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:40 Heat of formation + Delta-G solvation = 50.971643 kcal Electronic energy + Delta-G solvation = -17076.008274 eV Core-core repulsion = 14192.205802 eV Total energy + Delta-G solvation = -2883.802472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.33758 -40.02466 -37.40235 -36.22612 -35.00521 -33.28946 -30.71927 -29.90852 -27.62944 -26.37661 -24.51485 -23.36979 -22.11232 -20.85143 -20.14065 -18.46907 -18.09199 -17.70774 -17.06447 -16.85174 -16.18733 -15.45169 -14.97195 -14.82012 -14.26031 -14.13384 -13.83207 -13.69919 -13.43853 -13.13834 -13.04742 -12.89413 -12.67022 -12.64715 -12.20885 -11.73165 -11.59463 -11.49254 -11.06640 -10.16769 -9.98823 -9.46796 -8.53760 -8.50008 -6.43720 0.09412 0.44732 0.71877 0.77898 1.38968 1.39865 1.54374 1.67980 1.78525 2.15695 2.24043 2.34217 3.41887 3.64779 3.85324 4.12897 4.30427 4.50707 4.72736 4.82004 4.87073 4.96052 5.04782 5.10813 5.18489 5.22088 5.33773 5.49567 5.58025 5.85404 6.17908 6.50637 6.78152 6.85241 7.53870 8.40557 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.004817 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.139167 B = 5811.481253 C = 6414.678808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.008 4.008 3 N -0.528 5.528 4 C 0.424 3.576 5 N -0.566 5.566 6 C 0.264 3.736 7 N -0.474 5.474 8 C 0.224 3.776 9 C -0.467 4.467 10 H 0.090 0.910 11 C 0.027 3.973 12 N -0.785 5.785 13 Si 0.994 3.006 14 H -0.264 1.264 15 H -0.267 1.267 16 H -0.255 1.255 17 C -0.511 4.511 18 S 0.084 5.916 19 O -0.217 6.217 20 C -0.079 4.079 21 C -0.058 4.058 22 H 0.087 0.913 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.445 0.555 26 H 0.281 0.719 27 H 0.147 0.853 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 -7.461 -0.106 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 N -0.268 5.268 4 C 0.126 3.874 5 N -0.212 5.212 6 C -0.109 4.109 7 N -0.197 5.197 8 C 0.101 3.899 9 C -0.501 4.501 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.408 5.408 13 Si 0.814 3.186 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.178 1.178 17 C -0.650 4.650 18 S 0.326 5.674 19 O -0.104 6.104 20 C -0.132 4.132 21 C -0.114 4.114 22 H 0.106 0.894 23 H 0.124 0.876 24 H 0.091 0.909 25 H 0.290 0.710 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.187 -7.077 -0.111 15.854 hybrid contribution 2.208 0.837 -0.075 2.363 sum -11.978 -6.240 -0.186 13.508 Atomic orbital electron populations 1.20268 0.83105 1.04603 1.04027 1.22050 0.99458 0.86300 1.04918 1.70659 0.97190 1.32082 1.26884 1.21033 0.87396 0.78661 1.00320 1.39311 0.96937 1.07784 1.77160 1.24725 0.88816 0.93657 1.03667 1.67480 0.96297 1.35139 1.20817 1.18037 0.91475 0.87550 0.92852 1.19321 0.91317 0.93156 1.46295 0.89152 1.26946 1.02918 0.97403 0.91932 1.70219 1.32118 1.06136 1.32355 0.85022 0.76427 0.77880 0.79297 1.18846 1.19147 1.17845 1.25419 0.98111 0.98737 1.42714 1.82473 1.01783 1.04875 1.78228 1.84473 1.32619 1.20642 1.72697 1.23924 0.78288 1.00267 1.10762 1.20476 1.02795 0.83211 1.04961 0.89407 0.87559 0.90938 0.71050 0.90846 0.83489 0.88502 0.90359 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.21 71.24 0.73 -0.30 16 2 C -0.01 -0.22 7.10 41.20 0.29 0.07 16 3 N -0.53 -18.58 11.34 -301.79 -3.42 -22.00 16 4 C 0.42 16.35 8.91 179.02 1.60 17.94 16 5 N -0.57 -23.89 5.51 -307.99 -1.70 -25.59 16 6 C 0.26 12.99 8.34 179.48 1.50 14.49 16 7 N -0.47 -26.72 8.53 -190.93 -1.63 -28.35 16 8 C 0.22 12.92 6.46 39.44 0.25 13.17 16 9 C -0.47 -26.38 9.22 23.29 0.21 -26.16 16 10 H 0.09 4.82 7.85 -2.91 -0.02 4.80 16 11 C 0.03 1.43 5.48 85.13 0.47 1.90 16 12 N -0.78 -43.08 11.71 21.78 0.26 -42.83 16 13 Si 0.99 39.22 29.56 68.60 2.03 41.25 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 15 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 17 C -0.51 -26.81 10.97 67.71 0.74 -26.07 16 18 S 0.08 3.83 20.48 -56.49 -1.16 2.68 16 19 O -0.22 -7.83 8.16 -9.30 -0.08 -7.90 16 20 C -0.08 -2.15 7.38 24.76 0.18 -1.96 16 21 C -0.06 -0.89 10.21 71.24 0.73 -0.16 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.11 1.02 7.15 -2.38 -0.02 1.01 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.44 17.69 8.94 -92.71 -0.83 16.86 16 26 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.15 7.31 8.06 -2.91 -0.02 7.29 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.03 7.15 -2.38 -0.02 1.01 16 Total: -1.00 -69.91 280.92 1.37 -68.54 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.36 Total: 21.29 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.70 Total: -7.08 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -6.49 Total: -118.77 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.08 Total: -7.90 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.16 Total: 2.68 kcal Total: -69.91 1.37 -68.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.515 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds