Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33819 * 124.52135 * 2 1 4 4 C 1.37472 * 115.10415 * 179.97438 * 3 2 1 5 5 C 1.36654 * 113.29381 * 359.97438 * 4 3 2 6 6 C 1.46582 * 125.45439 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00313 * 5.47127 * 6 5 4 8 8 N 1.34778 * 119.99749 * 185.47345 * 6 5 4 9 9 C 1.47420 * 125.65000 * 175.10259 * 8 6 5 10 10 C 1.55127 * 104.94447 * 204.03810 * 9 8 6 11 11 C 1.55157 * 101.48294 * 323.22065 * 10 9 8 12 12 H 1.09001 * 110.72454 * 276.83105 * 11 10 9 13 13 C 1.50699 * 110.71703 * 153.73359 * 11 10 9 14 14 H 1.07998 * 120.00170 * 2.44227 * 13 11 10 15 15 C 1.37884 * 120.00017 * 182.71604 * 13 11 10 16 16 N 1.31515 * 119.99664 * 359.72620 * 15 13 11 17 17 Si 1.86797 * 120.00197 * 179.72766 * 15 13 11 18 18 H 1.48498 * 109.46937 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47102 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46931 * 240.00037 * 17 15 13 21 21 C 1.47027 * 125.64730 * 355.14180 * 8 6 5 22 22 S 1.70613 * 124.52429 * 180.27041 * 2 1 3 23 23 H 1.09001 * 109.47202 * 90.00178 * 1 2 3 24 24 H 1.09002 * 109.47027 * 210.00228 * 1 2 3 25 25 H 1.08996 * 109.47544 * 330.00121 * 1 2 3 26 26 H 1.08000 * 122.45078 * 359.97438 * 3 2 1 27 27 H 1.07991 * 123.35507 * 180.02562 * 4 3 2 28 28 H 1.08999 * 110.36869 * 323.00170 * 9 8 6 29 29 H 1.08997 * 110.36821 * 85.21556 * 9 8 6 30 30 H 1.09000 * 111.16011 * 205.13373 * 10 9 8 31 31 H 1.08999 * 110.93410 * 81.21575 * 10 9 8 32 32 H 0.96999 * 119.99957 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.88127 * 59.48976 * 21 8 6 34 34 H 1.09002 * 110.01355 * 298.39488 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4490 0.0016 6 6 5.3124 -0.9881 0.0029 7 8 6.2640 -0.2363 0.1036 8 7 5.5118 -2.3165 -0.1075 9 6 6.8222 -2.9821 -0.2220 10 6 6.5245 -4.3336 -0.9229 11 6 5.1540 -4.7093 -0.3001 12 1 5.2895 -5.1926 0.6675 13 6 4.3702 -5.5969 -1.2322 14 1 4.8044 -5.9134 -2.1690 15 6 3.0965 -6.0004 -0.8915 16 7 2.5678 -5.6149 0.2493 17 14 2.1220 -7.0943 -2.0503 18 1 2.9352 -7.3841 -3.2585 19 1 1.7847 -8.3668 -1.3632 20 1 0.8712 -6.4012 -2.4506 21 6 4.4583 -3.3418 -0.1345 22 16 2.4739 -1.4056 -0.0066 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.8429 2.0965 -0.0004 27 1 4.3549 1.6703 0.0010 28 1 7.5012 -2.3813 -0.8272 29 1 7.2478 -3.1544 0.7665 30 1 7.2819 -5.0785 -0.6789 31 1 6.4407 -4.2027 -2.0018 32 1 1.6716 -5.8984 0.4889 33 1 3.7881 -3.1626 -0.9753 34 1 3.8953 -3.3228 0.7987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259994596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -13.084632 kcal Electronic energy + Delta-G solvation = -17883.883541 eV Core-core repulsion = 15100.843724 eV Total energy + Delta-G solvation = -2783.039817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38412 -37.68498 -36.47222 -33.00349 -31.92552 -30.67875 -28.41440 -26.78385 -25.00426 -23.49191 -22.38044 -20.38315 -19.77072 -17.97812 -17.35336 -16.53173 -15.64290 -15.43208 -15.13099 -14.52836 -14.15306 -13.84142 -13.40414 -12.91726 -12.67825 -12.55638 -12.17371 -12.06172 -11.79510 -11.70203 -11.61817 -11.52240 -11.03327 -10.80464 -10.61059 -10.36819 -9.79374 -9.59270 -9.36620 -9.15276 -8.61662 -8.41749 -8.22934 -7.81981 -6.21628 -4.25588 0.88310 1.91379 2.35555 2.69119 3.19781 3.29254 3.32816 3.59229 3.68810 4.30246 4.97693 5.08292 5.14865 5.33610 5.55238 5.57343 5.63772 5.76302 5.81534 5.85348 5.99181 6.14097 6.24989 6.35085 6.45052 6.60784 6.66818 6.72666 6.78308 6.92126 7.18048 7.55735 7.77431 8.10614 8.21026 8.62390 8.78718 9.40590 10.88069 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.008252 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.879182 B = 3392.183095 C = 4852.300602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.240 4.240 3 C -0.163 4.163 4 C -0.068 4.068 5 C -0.270 4.270 6 C 0.596 3.404 7 O -0.558 6.558 8 N -0.612 5.612 9 C 0.109 3.891 10 C -0.129 4.129 11 C 0.050 3.950 12 H 0.045 0.955 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.102 3.898 22 S 0.281 5.719 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 7.709 -0.125 8.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.359 4.359 3 C -0.193 4.193 4 C -0.102 4.102 5 C -0.390 4.390 6 C 0.385 3.615 7 O -0.440 6.440 8 N -0.343 5.343 9 C -0.013 4.013 10 C -0.167 4.167 11 C 0.031 3.969 12 H 0.063 0.937 13 C -0.555 4.555 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.021 4.021 22 S 0.552 5.448 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.689 6.586 0.040 7.114 hybrid contribution -0.519 1.069 -0.519 1.297 sum -3.209 7.656 -0.479 8.315 Atomic orbital electron populations 1.20313 0.88114 1.02968 1.02610 1.24856 1.02033 1.00864 1.08169 1.19791 0.92587 0.99058 1.07894 1.20567 0.95945 0.94947 0.98692 1.24681 0.97629 0.98199 1.18523 1.16630 0.86785 0.81061 0.77042 1.90740 1.42366 1.57995 1.52873 1.48744 1.10284 1.05112 1.70205 1.22251 0.84826 0.94149 1.00096 1.22941 0.99852 0.93968 0.99983 1.19680 0.89606 0.90324 0.97309 0.93726 1.21077 0.99635 1.30041 1.04753 0.91885 1.25011 0.97700 0.95855 0.95171 1.69938 1.16034 1.44921 1.21452 0.86532 0.80013 0.80433 0.81102 1.19654 1.20880 1.20873 1.22716 0.89357 0.88625 1.01441 1.84629 0.92415 1.02992 1.64810 0.90859 0.91189 0.91007 0.84907 0.83718 0.91599 0.92135 0.91147 0.91460 0.92666 0.91207 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 36.00 0.37 -0.56 16 2 C -0.24 -3.54 6.28 -35.86 -0.23 -3.76 16 3 C -0.16 -2.34 9.99 -41.41 -0.41 -2.76 16 4 C -0.07 -1.12 10.02 -40.43 -0.40 -1.52 16 5 C -0.27 -5.10 6.38 -36.79 -0.23 -5.33 16 6 C 0.60 12.65 7.80 -12.89 -0.10 12.55 16 7 O -0.56 -12.82 17.14 5.20 0.09 -12.73 16 8 N -0.61 -12.79 3.33 -171.96 -0.57 -13.37 16 9 C 0.11 2.06 6.89 -2.41 -0.02 2.04 16 10 C -0.13 -2.48 6.52 -24.46 -0.16 -2.64 16 11 C 0.05 1.14 2.83 -89.94 -0.25 0.89 16 12 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.52 -12.88 8.39 -34.44 -0.29 -13.17 16 14 H 0.06 1.56 7.77 -52.49 -0.41 1.16 16 15 C 0.07 1.65 5.34 -17.82 -0.10 1.56 16 16 N -0.89 -22.82 12.57 55.43 0.70 -22.12 16 17 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 C 0.10 2.23 3.92 -3.06 -0.01 2.22 16 22 S 0.28 4.96 18.41 -107.50 -1.98 2.98 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.07 1.61 6.32 -51.89 -0.33 1.28 16 34 H 0.07 1.62 7.09 -51.93 -0.37 1.25 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -27.77 297.56 -8.60 -36.36 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.46 Total: 0.21 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.83 Total: -10.49 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.12 Total: -35.49 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.98 Total: 2.98 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.77 -8.60 -36.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.277 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds