Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33819 * 124.52135 * 2 1 4 4 C 1.37472 * 115.10415 * 179.97438 * 3 2 1 5 5 C 1.36654 * 113.29381 * 359.97438 * 4 3 2 6 6 C 1.46582 * 125.45439 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00313 * 5.47127 * 6 5 4 8 8 N 1.34778 * 119.99749 * 185.47345 * 6 5 4 9 9 C 1.47420 * 125.65000 * 175.10259 * 8 6 5 10 10 C 1.55127 * 104.94447 * 204.03810 * 9 8 6 11 11 C 1.55157 * 101.48294 * 323.22065 * 10 9 8 12 12 H 1.09001 * 110.72454 * 276.83105 * 11 10 9 13 13 C 1.50699 * 110.71703 * 153.73359 * 11 10 9 14 14 H 1.07998 * 120.00170 * 2.44227 * 13 11 10 15 15 C 1.37884 * 120.00017 * 182.71604 * 13 11 10 16 16 N 1.31515 * 119.99664 * 359.72620 * 15 13 11 17 17 Si 1.86797 * 120.00197 * 179.72766 * 15 13 11 18 18 H 1.48498 * 109.46937 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47102 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46931 * 240.00037 * 17 15 13 21 21 C 1.47027 * 125.64730 * 355.14180 * 8 6 5 22 22 S 1.70613 * 124.52429 * 180.27041 * 2 1 3 23 23 H 1.09001 * 109.47202 * 90.00178 * 1 2 3 24 24 H 1.09002 * 109.47027 * 210.00228 * 1 2 3 25 25 H 1.08996 * 109.47544 * 330.00121 * 1 2 3 26 26 H 1.08000 * 122.45078 * 359.97438 * 3 2 1 27 27 H 1.07991 * 123.35507 * 180.02562 * 4 3 2 28 28 H 1.08999 * 110.36869 * 323.00170 * 9 8 6 29 29 H 1.08997 * 110.36821 * 85.21556 * 9 8 6 30 30 H 1.09000 * 111.16011 * 205.13373 * 10 9 8 31 31 H 1.08999 * 110.93410 * 81.21575 * 10 9 8 32 32 H 0.96999 * 119.99957 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.88127 * 59.48976 * 21 8 6 34 34 H 1.09002 * 110.01355 * 298.39488 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4490 0.0016 6 6 5.3124 -0.9881 0.0029 7 8 6.2640 -0.2363 0.1036 8 7 5.5118 -2.3165 -0.1075 9 6 6.8222 -2.9821 -0.2220 10 6 6.5245 -4.3336 -0.9229 11 6 5.1540 -4.7093 -0.3001 12 1 5.2895 -5.1926 0.6675 13 6 4.3702 -5.5969 -1.2322 14 1 4.8044 -5.9134 -2.1690 15 6 3.0965 -6.0004 -0.8915 16 7 2.5678 -5.6149 0.2493 17 14 2.1220 -7.0943 -2.0503 18 1 2.9352 -7.3841 -3.2585 19 1 1.7847 -8.3668 -1.3632 20 1 0.8712 -6.4012 -2.4506 21 6 4.4583 -3.3418 -0.1345 22 16 2.4739 -1.4056 -0.0066 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.8429 2.0965 -0.0004 27 1 4.3549 1.6703 0.0010 28 1 7.5012 -2.3813 -0.8272 29 1 7.2478 -3.1544 0.7665 30 1 7.2819 -5.0785 -0.6789 31 1 6.4407 -4.2027 -2.0018 32 1 1.6716 -5.8984 0.4889 33 1 3.7881 -3.1626 -0.9753 34 1 3.8953 -3.3228 0.7987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259994596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = -27.835614 kcal Electronic energy + Delta-G solvation = -17884.523191 eV Core-core repulsion = 15100.843724 eV Total energy + Delta-G solvation = -2783.679467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00253 -39.05380 -38.05820 -34.86873 -33.21746 -32.24791 -30.07629 -28.09718 -26.83523 -24.84344 -23.82425 -21.96897 -21.36833 -19.35350 -18.91414 -18.37999 -17.24723 -16.84948 -16.71798 -16.31795 -15.52875 -15.10977 -14.76222 -14.37417 -14.29177 -13.96410 -13.73112 -13.45876 -13.30968 -13.27103 -12.92361 -12.82239 -12.70107 -12.46560 -12.32185 -11.92066 -11.33159 -11.27363 -11.05651 -10.97642 -10.53547 -9.87241 -9.54396 -9.35996 -8.13500 -6.23171 -0.44701 0.57918 1.07988 1.40027 1.44336 1.48946 1.57919 2.03200 2.15549 2.46232 3.18133 3.56541 3.91012 4.07733 4.16843 4.30062 4.31858 4.43414 4.58828 4.60798 4.68742 4.72483 4.92040 5.03720 5.05932 5.09561 5.16071 5.19179 5.32738 5.45273 5.49837 5.68921 5.86692 6.27249 6.49960 6.82989 7.01599 7.45348 8.95759 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.008252 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.879182 B = 3392.183095 C = 4852.300602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.216 4.216 3 C -0.163 4.163 4 C -0.052 4.052 5 C -0.307 4.307 6 C 0.592 3.408 7 O -0.583 6.583 8 N -0.618 5.618 9 C 0.107 3.893 10 C -0.117 4.117 11 C 0.040 3.960 12 H 0.022 0.978 13 C -0.532 4.532 14 H 0.061 0.939 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.280 1.280 21 C 0.124 3.876 22 S 0.229 5.771 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.172 0.828 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.057 0.943 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 8.821 -0.708 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.336 4.336 3 C -0.192 4.192 4 C -0.087 4.087 5 C -0.427 4.427 6 C 0.382 3.618 7 O -0.468 6.468 8 N -0.349 5.349 9 C -0.015 4.015 10 C -0.154 4.154 11 C 0.021 3.979 12 H 0.040 0.960 13 C -0.570 4.570 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.773 3.227 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.206 1.206 21 C 0.001 3.999 22 S 0.498 5.502 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.189 0.811 27 H 0.173 0.827 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.814 7.685 -0.546 8.596 hybrid contribution -0.225 0.807 -0.313 0.894 sum -4.039 8.492 -0.859 9.443 Atomic orbital electron populations 1.20497 0.85400 1.04378 1.03989 1.25223 1.03553 0.99058 1.05778 1.20119 0.91433 1.00672 1.06963 1.20918 0.97401 0.94150 0.96236 1.24558 0.96733 0.99230 1.22214 1.16985 0.87633 0.80838 0.76304 1.90703 1.43411 1.58334 1.54319 1.48822 1.10661 1.05166 1.70276 1.22368 0.84337 0.93909 1.00841 1.22854 0.98353 0.94617 0.99619 1.19653 0.91706 0.90374 0.96197 0.95965 1.21320 1.00158 1.30531 1.04970 0.92117 1.25644 0.98547 0.96966 0.96386 1.70031 1.16262 1.45635 1.22571 0.85664 0.78742 0.78803 0.79457 1.19349 1.20800 1.20578 1.22299 0.89147 0.88461 1.00036 1.84770 0.93478 1.05498 1.66449 0.89341 0.91197 0.88157 0.81063 0.82732 0.90587 0.91158 0.88907 0.91543 0.92614 0.92470 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.31 71.23 0.73 -0.91 16 2 C -0.22 -5.89 6.28 24.68 0.15 -5.73 16 3 C -0.16 -4.18 9.99 21.08 0.21 -3.97 16 4 C -0.05 -1.65 10.02 21.72 0.22 -1.43 16 5 C -0.31 -11.64 6.38 24.08 0.15 -11.49 16 6 C 0.59 25.47 7.80 86.42 0.67 26.14 16 7 O -0.58 -27.01 17.14 -4.32 -0.07 -27.08 16 8 N -0.62 -26.29 3.33 -816.17 -2.72 -29.00 16 9 C 0.11 4.02 6.89 86.93 0.60 4.62 16 10 C -0.12 -4.42 6.52 32.06 0.21 -4.21 16 11 C 0.04 1.86 2.83 -10.35 -0.03 1.83 16 12 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 13 C -0.53 -26.75 8.39 25.60 0.21 -26.54 16 14 H 0.06 3.01 7.77 -2.91 -0.02 2.99 16 15 C 0.03 1.29 5.34 84.66 0.45 1.74 16 16 N -0.91 -47.42 12.57 21.45 0.27 -47.15 16 17 Si 0.95 40.32 29.54 68.60 2.03 42.35 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 C 0.12 5.60 3.92 86.73 0.34 5.94 16 22 S 0.23 8.10 18.41 -56.49 -1.04 7.06 16 23 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.16 4.50 8.06 -2.92 -0.02 4.47 16 28 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.07 2.52 8.03 -2.39 -0.02 2.51 16 32 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 33 H 0.06 2.73 6.32 -2.41 -0.02 2.71 16 34 H 0.05 2.59 7.09 -2.39 -0.02 2.57 16 Total: -1.00 -59.70 297.56 3.49 -56.21 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.09 Total: 11.62 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 3.93 Total: -14.01 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.45 Total: -76.15 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.07 Total: -27.08 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: 8.10 SS G_CDS: -1.04 Total: 7.06 kcal Total: -59.70 3.49 -56.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.376 kcal (2) G-P(sol) polarization free energy of solvation -59.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds