Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48496 * 109.46911 * 90.00240 * 3 2 1 5 5 H 1.48495 * 109.47108 * 210.00059 * 3 2 1 6 6 H 1.48498 * 109.46802 * 330.00366 * 3 2 1 7 7 C 1.37882 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00276 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99392 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.47714 * 299.99981 * 9 7 2 11 11 N 1.46900 * 109.47060 * 60.00712 * 9 7 2 12 12 C 1.50701 * 109.46776 * 180.02562 * 9 7 2 13 13 C 1.38169 * 120.03097 * 264.72983 * 12 9 7 14 14 C 1.38247 * 120.05451 * 179.74974 * 13 12 9 15 15 C 1.38293 * 120.11174 * 0.54606 * 14 13 12 16 16 C 1.38125 * 120.05433 * 359.70768 * 15 14 13 17 17 C 1.38715 * 120.02513 * 85.00671 * 12 9 7 18 18 O 1.35898 * 120.05431 * 359.95096 * 17 12 9 19 19 C 1.42905 * 116.99747 * 186.05710 * 18 17 12 20 20 C 1.53041 * 113.14946 * 257.96393 * 19 18 17 21 21 S 1.81499 * 89.86070 * 211.86694 * 20 19 18 22 22 C 1.53035 * 113.15122 * 157.53489 * 19 18 17 23 23 H 0.97006 * 120.00041 * 359.97438 * 1 2 3 24 24 H 1.00908 * 110.99951 * 59.99414 * 11 9 7 25 25 H 1.00895 * 111.00151 * 183.94413 * 11 9 7 26 26 H 1.07992 * 119.97050 * 0.02562 * 13 12 9 27 27 H 1.07994 * 119.94564 * 180.29686 * 14 13 12 28 28 H 1.08001 * 119.97234 * 179.72685 * 15 14 13 29 29 H 1.07996 * 120.02278 * 180.02562 * 16 15 14 30 30 H 1.09004 * 112.49890 * 27.74619 * 19 18 17 31 31 H 1.09000 * 113.15105 * 327.10800 * 20 19 18 32 32 H 1.09001 * 113.14910 * 96.59629 * 20 19 18 33 33 H 1.09000 * 113.14846 * 263.40638 * 22 19 18 34 34 H 1.09004 * 113.15257 * 32.84256 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6801 -0.8911 11 7 4.0016 -0.5020 1.1984 12 6 4.0138 -2.6149 -0.0023 13 6 4.3483 -3.2310 1.1883 14 6 4.8042 -4.5362 1.1883 15 6 4.9374 -5.2246 -0.0037 16 6 4.6093 -4.6113 -1.1970 17 6 4.1461 -3.3034 -1.1992 18 8 3.8221 -2.6980 -2.3720 19 6 3.8555 -3.5061 -3.5501 20 6 5.1086 -3.2804 -4.3992 21 16 4.1509 -3.6364 -5.8993 22 6 2.9901 -2.9524 -4.6843 23 1 -0.4850 0.8401 0.0004 24 1 3.6783 -0.9598 2.0375 25 1 5.0080 -0.4320 1.1896 26 1 4.2493 -2.6941 2.1201 27 1 5.0607 -5.0176 2.1204 28 1 5.2980 -6.2426 -0.0014 29 1 4.7131 -5.1495 -2.1276 30 1 3.6643 -4.5584 -3.3397 31 1 5.4750 -2.2546 -4.3582 32 1 5.8935 -4.0121 -4.2078 33 1 2.0017 -3.4096 -4.7314 34 1 2.9468 -1.8633 -4.6978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = 21.271441 kcal Electronic energy + Delta-G solvation = -18048.800185 eV Core-core repulsion = 15267.250159 eV Total energy + Delta-G solvation = -2781.550026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07625 -37.79765 -34.84673 -34.43155 -31.86443 -29.72607 -29.27612 -26.46026 -26.28205 -23.54301 -22.63184 -20.95647 -19.87080 -18.21983 -16.88037 -16.50149 -15.65618 -15.53832 -15.27975 -14.80818 -14.46750 -14.04609 -13.73184 -13.41234 -13.35107 -13.01634 -12.56423 -12.30803 -11.94697 -11.78289 -11.41714 -11.13465 -10.88601 -10.71794 -10.64169 -10.48734 -10.17536 -9.78605 -9.29887 -8.50429 -8.36890 -7.97980 -7.72235 -7.62100 -5.97453 -4.06322 1.56982 1.70104 1.74701 1.88199 3.47302 3.59396 3.63008 3.76473 4.10423 4.29442 4.61260 4.68083 4.77696 5.10520 5.16424 5.21425 5.28617 5.29939 5.40441 5.56891 5.63594 5.72842 5.89938 5.98129 6.02264 6.41941 6.62953 6.71296 6.86709 7.10601 7.19275 7.64494 7.79817 8.14853 8.33116 8.69600 9.02124 9.65860 11.12113 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.007794 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.372709 B = 3591.762095 C = 4869.839223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.081 3.919 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.320 1.320 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.222 3.778 10 H 0.056 0.944 11 N -0.842 5.842 12 C -0.090 4.090 13 C -0.094 4.094 14 C -0.154 4.154 15 C -0.105 4.105 16 C -0.211 4.211 17 C 0.127 3.873 18 O -0.273 6.273 19 C 0.081 3.919 20 C -0.105 4.105 21 S -0.278 6.278 22 C -0.076 4.076 23 H 0.263 0.737 24 H 0.334 0.666 25 H 0.311 0.689 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -8.664 -4.407 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.122 4.122 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.249 1.249 7 C -0.545 4.545 8 H 0.087 0.913 9 C 0.113 3.887 10 H 0.074 0.926 11 N -0.372 5.372 12 C -0.093 4.093 13 C -0.113 4.113 14 C -0.173 4.173 15 C -0.123 4.123 16 C -0.230 4.230 17 C 0.082 3.918 18 O -0.186 6.186 19 C 0.022 3.978 20 C -0.254 4.254 21 S -0.053 6.053 22 C -0.224 4.224 23 H 0.072 0.928 24 H 0.148 0.852 25 H 0.122 0.878 26 H 0.142 0.858 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.468 -8.238 -6.075 14.641 hybrid contribution 0.776 0.022 1.180 1.413 sum 11.244 -8.215 -4.895 14.761 Atomic orbital electron populations 1.69959 1.06763 1.27228 1.49933 1.24995 0.94569 0.99960 0.92692 0.85878 0.78486 0.80889 0.77944 1.20755 1.19953 1.24941 1.20653 0.87036 0.94379 1.52402 0.91320 1.18572 0.96401 0.83476 0.90265 0.92596 1.59372 1.12975 1.58597 1.06260 1.20698 0.98169 1.00795 0.89654 1.20827 0.98443 0.94696 0.97315 1.20943 1.03499 0.95192 0.97617 1.20709 1.00382 0.99146 0.92099 1.21132 1.07742 0.95055 0.99048 1.18809 0.95986 0.91303 0.85728 1.86352 1.83156 1.36537 1.12574 1.23922 0.92660 0.96980 0.84267 1.25113 1.01868 1.06749 0.91650 1.88893 1.11646 1.82355 1.22436 1.24604 1.01827 1.05822 0.90186 0.92814 0.85151 0.87753 0.85837 0.86690 0.86668 0.86181 0.86636 0.86599 0.88259 0.87474 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 3 Si 0.94 23.86 26.03 -169.99 -4.42 19.44 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 6 H -0.32 -8.27 7.11 56.52 0.40 -7.86 16 7 C -0.51 -14.01 9.29 -34.44 -0.32 -14.33 16 8 H 0.07 2.11 7.98 -52.49 -0.42 1.69 16 9 C 0.22 5.07 2.06 -70.02 -0.14 4.92 16 10 H 0.06 1.37 6.75 -51.93 -0.35 1.02 16 11 N -0.84 -17.24 6.36 -6.65 -0.04 -17.28 16 12 C -0.09 -1.79 5.00 -104.47 -0.52 -2.31 16 13 C -0.09 -1.62 9.27 -39.60 -0.37 -1.99 16 14 C -0.15 -2.28 10.04 -39.56 -0.40 -2.68 16 15 C -0.11 -1.48 10.04 -39.60 -0.40 -1.88 16 16 C -0.21 -3.18 9.00 -39.43 -0.35 -3.53 16 17 C 0.13 2.32 6.65 -39.21 -0.26 2.06 16 18 O -0.27 -4.91 9.24 -19.42 -0.18 -5.09 16 19 C 0.08 1.11 3.26 -26.69 -0.09 1.02 16 20 C -0.11 -1.23 7.79 37.18 0.29 -0.94 16 21 S -0.28 -3.50 24.80 -107.50 -2.67 -6.17 16 22 C -0.08 -1.00 7.79 37.18 0.29 -0.71 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.33 6.47 7.21 -39.29 -0.28 6.18 16 25 H 0.31 5.45 9.06 -39.29 -0.36 5.09 16 26 H 0.12 1.96 6.29 -52.49 -0.33 1.63 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.49 5.98 -52.49 -0.31 1.18 16 30 H 0.12 1.43 6.09 -51.93 -0.32 1.11 16 31 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -31.53 293.14 -8.56 -40.09 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.07 Total: 9.57 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.37 Total: -18.12 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.73 Total: -44.14 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.18 Total: -5.09 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.42 Total: 19.44 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.67 Total: -6.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.53 -8.56 -40.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds