Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48496 * 109.46911 * 90.00240 * 3 2 1 5 5 H 1.48495 * 109.47108 * 210.00059 * 3 2 1 6 6 H 1.48498 * 109.46802 * 330.00366 * 3 2 1 7 7 C 1.37882 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00276 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99392 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.47714 * 299.99981 * 9 7 2 11 11 N 1.46900 * 109.47060 * 60.00712 * 9 7 2 12 12 C 1.50701 * 109.46776 * 180.02562 * 9 7 2 13 13 C 1.38169 * 120.03097 * 264.72983 * 12 9 7 14 14 C 1.38247 * 120.05451 * 179.74974 * 13 12 9 15 15 C 1.38293 * 120.11174 * 0.54606 * 14 13 12 16 16 C 1.38125 * 120.05433 * 359.70768 * 15 14 13 17 17 C 1.38715 * 120.02513 * 85.00671 * 12 9 7 18 18 O 1.35898 * 120.05431 * 359.95096 * 17 12 9 19 19 C 1.42905 * 116.99747 * 186.05710 * 18 17 12 20 20 C 1.53041 * 113.14946 * 257.96393 * 19 18 17 21 21 S 1.81499 * 89.86070 * 211.86694 * 20 19 18 22 22 C 1.53035 * 113.15122 * 157.53489 * 19 18 17 23 23 H 0.97006 * 120.00041 * 359.97438 * 1 2 3 24 24 H 1.00908 * 110.99951 * 59.99414 * 11 9 7 25 25 H 1.00895 * 111.00151 * 183.94413 * 11 9 7 26 26 H 1.07992 * 119.97050 * 0.02562 * 13 12 9 27 27 H 1.07994 * 119.94564 * 180.29686 * 14 13 12 28 28 H 1.08001 * 119.97234 * 179.72685 * 15 14 13 29 29 H 1.07996 * 120.02278 * 180.02562 * 16 15 14 30 30 H 1.09004 * 112.49890 * 27.74619 * 19 18 17 31 31 H 1.09000 * 113.15105 * 327.10800 * 20 19 18 32 32 H 1.09001 * 113.14910 * 96.59629 * 20 19 18 33 33 H 1.09000 * 113.14846 * 263.40638 * 22 19 18 34 34 H 1.09004 * 113.15257 * 32.84256 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6801 -0.8911 11 7 4.0016 -0.5020 1.1984 12 6 4.0138 -2.6149 -0.0023 13 6 4.3483 -3.2310 1.1883 14 6 4.8042 -4.5362 1.1883 15 6 4.9374 -5.2246 -0.0037 16 6 4.6093 -4.6113 -1.1970 17 6 4.1461 -3.3034 -1.1992 18 8 3.8221 -2.6980 -2.3720 19 6 3.8555 -3.5061 -3.5501 20 6 5.1086 -3.2804 -4.3992 21 16 4.1509 -3.6364 -5.8993 22 6 2.9901 -2.9524 -4.6843 23 1 -0.4850 0.8401 0.0004 24 1 3.6783 -0.9598 2.0375 25 1 5.0080 -0.4320 1.1896 26 1 4.2493 -2.6941 2.1201 27 1 5.0607 -5.0176 2.1204 28 1 5.2980 -6.2426 -0.0014 29 1 4.7131 -5.1495 -2.1276 30 1 3.6643 -4.5584 -3.3397 31 1 5.4750 -2.2546 -4.3582 32 1 5.8935 -4.0121 -4.2078 33 1 2.0017 -3.4096 -4.7314 34 1 2.9468 -1.8633 -4.6978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = 0.073909 kcal Electronic energy + Delta-G solvation = -18049.719379 eV Core-core repulsion = 15267.250159 eV Total energy + Delta-G solvation = -2782.469220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31530 -39.03594 -36.49293 -35.55385 -33.96764 -31.01160 -30.60466 -28.27073 -27.40844 -24.88280 -24.07063 -22.18592 -21.34164 -19.42403 -18.95192 -17.59240 -16.93771 -16.84874 -16.52926 -16.39772 -15.86941 -15.67376 -15.01366 -14.85722 -14.64066 -14.24884 -14.01830 -13.73980 -13.56264 -13.06260 -12.70033 -12.64978 -12.52743 -12.21234 -11.85952 -11.73974 -11.63790 -11.45702 -11.41462 -10.71689 -9.67049 -9.36002 -8.98253 -8.94019 -8.20955 -6.31524 0.48416 0.53391 0.67263 0.71527 1.51033 1.57580 1.71506 2.33106 2.54784 2.92590 3.13957 3.20582 3.59057 3.73071 3.99068 4.05460 4.19509 4.26064 4.27493 4.30601 4.47499 4.57823 4.59381 4.72697 4.84082 5.03977 5.19318 5.45717 5.51877 5.64401 5.78682 5.98974 6.16901 6.45837 6.62674 6.80123 7.01727 7.43691 8.92422 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.007794 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.372709 B = 3591.762095 C = 4869.839223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.326 1.326 7 C -0.498 4.498 8 H 0.024 0.976 9 C 0.235 3.765 10 H 0.036 0.964 11 N -0.845 5.845 12 C -0.133 4.133 13 C -0.102 4.102 14 C -0.154 4.154 15 C -0.094 4.094 16 C -0.209 4.209 17 C 0.110 3.890 18 O -0.304 6.304 19 C 0.076 3.924 20 C -0.094 4.094 21 S -0.275 6.275 22 C -0.083 4.083 23 H 0.263 0.737 24 H 0.341 0.659 25 H 0.333 0.667 26 H 0.129 0.871 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.536 -10.252 -4.176 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.172 4.172 3 Si 0.828 3.172 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.256 1.256 7 C -0.536 4.536 8 H 0.043 0.957 9 C 0.125 3.875 10 H 0.054 0.946 11 N -0.377 5.377 12 C -0.136 4.136 13 C -0.120 4.120 14 C -0.172 4.172 15 C -0.112 4.112 16 C -0.227 4.227 17 C 0.064 3.936 18 O -0.218 6.218 19 C 0.017 3.983 20 C -0.242 4.242 21 S -0.050 6.050 22 C -0.232 4.232 23 H 0.071 0.929 24 H 0.156 0.844 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.032 -9.842 -5.844 17.345 hybrid contribution 0.010 0.354 1.088 1.144 sum 13.041 -9.488 -4.756 16.814 Atomic orbital electron populations 1.70090 1.08423 1.27909 1.52604 1.25797 0.95125 1.03339 0.92909 0.84878 0.77368 0.76859 0.78049 1.20124 1.18946 1.25625 1.20874 0.89972 0.92250 1.50521 0.95736 1.18070 0.93058 0.86158 0.90217 0.94593 1.59036 1.14653 1.58344 1.05669 1.20506 1.01625 0.99689 0.91738 1.20996 0.98456 0.95997 0.96539 1.21321 1.02318 0.94113 0.99490 1.21234 0.98180 1.00606 0.91210 1.21456 1.06566 0.93768 1.00931 1.19031 0.96640 0.92571 0.85353 1.86301 1.83541 1.38324 1.13618 1.24197 0.93836 0.97231 0.83040 1.25032 1.01513 1.07373 0.90261 1.88885 1.11476 1.82060 1.22596 1.24611 1.02443 1.05313 0.90799 0.92883 0.84387 0.85378 0.85332 0.83532 0.82743 0.83403 0.85185 0.86840 0.85927 0.87198 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.03 1.58 5.47 84.66 0.46 2.04 16 3 Si 1.00 50.13 26.03 68.60 1.79 51.91 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.26 -12.73 6.54 99.48 0.65 -12.08 16 6 H -0.33 -16.55 7.11 99.48 0.71 -15.84 16 7 C -0.50 -28.51 9.29 25.60 0.24 -28.27 16 8 H 0.02 1.58 7.98 -2.91 -0.02 1.55 16 9 C 0.23 10.83 2.06 43.42 0.09 10.92 16 10 H 0.04 1.79 6.75 -2.39 -0.02 1.78 16 11 N -0.85 -33.91 6.36 -174.95 -1.11 -35.03 16 12 C -0.13 -5.22 5.00 -19.77 -0.10 -5.31 16 13 C -0.10 -3.32 9.27 22.26 0.21 -3.12 16 14 C -0.15 -4.02 10.04 22.28 0.22 -3.80 16 15 C -0.09 -2.26 10.04 22.26 0.22 -2.03 16 16 C -0.21 -5.67 9.00 22.37 0.20 -5.47 16 17 C 0.11 3.90 6.65 22.51 0.15 4.05 16 18 O -0.30 -10.96 9.24 -92.41 -0.85 -11.81 16 19 C 0.08 1.99 3.26 30.62 0.10 2.09 16 20 C -0.09 -2.02 7.79 72.00 0.56 -1.46 16 21 S -0.28 -6.54 24.80 -56.49 -1.40 -7.94 16 22 C -0.08 -2.18 7.79 71.99 0.56 -1.62 16 23 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 24 H 0.34 12.95 7.21 -89.69 -0.65 12.31 16 25 H 0.33 11.14 9.06 -89.70 -0.81 10.33 16 26 H 0.13 3.91 6.29 -2.91 -0.02 3.89 16 27 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.08 5.98 -2.91 -0.02 3.07 16 30 H 0.13 2.95 6.09 -2.38 -0.01 2.93 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -70.35 293.14 1.26 -69.09 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.38 Total: 25.87 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 2.92 Total: -31.98 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -0.81 Total: -95.14 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.85 Total: -11.81 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.79 Total: 51.91 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.40 Total: -7.94 kcal Total: -70.35 1.26 -69.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -70.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds