Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00245 * 2 1 4 4 H 1.48492 * 109.47429 * 270.00728 * 3 2 1 5 5 H 1.48503 * 109.46834 * 30.00542 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.00213 * 3 2 1 7 7 C 1.37883 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47459 * 59.99371 * 9 7 2 11 11 N 1.46904 * 109.46784 * 299.99147 * 9 7 2 12 12 C 1.50697 * 109.46988 * 179.97438 * 9 7 2 13 13 C 1.38170 * 120.02701 * 99.99534 * 12 9 7 14 14 C 1.38250 * 120.05323 * 179.97438 * 13 12 9 15 15 C 1.38288 * 120.11100 * 0.02562 * 14 13 12 16 16 C 1.38123 * 120.05800 * 0.02562 * 15 14 13 17 17 C 1.38705 * 120.03096 * 280.01745 * 12 9 7 18 18 O 1.35906 * 120.05247 * 359.95479 * 17 12 9 19 19 C 1.42898 * 116.99862 * 186.07413 * 18 17 12 20 20 C 1.53047 * 113.15459 * 257.95409 * 19 18 17 21 21 S 1.81502 * 89.86285 * 211.86958 * 20 19 18 22 22 C 1.53050 * 113.14944 * 157.52827 * 19 18 17 23 23 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 24 24 H 1.00904 * 111.00064 * 176.04533 * 11 9 7 25 25 H 1.00898 * 111.00423 * 300.00435 * 11 9 7 26 26 H 1.07998 * 119.97517 * 0.02562 * 13 12 9 27 27 H 1.08000 * 119.94286 * 180.02562 * 14 13 12 28 28 H 1.08006 * 119.96953 * 179.74452 * 15 14 13 29 29 H 1.07995 * 120.02625 * 179.97438 * 16 15 14 30 30 H 1.08996 * 112.49697 * 27.74622 * 19 18 17 31 31 H 1.08997 * 113.14829 * 327.11678 * 20 19 18 32 32 H 1.08996 * 113.14082 * 96.59476 * 20 19 18 33 33 H 1.09002 * 113.14484 * 263.40864 * 22 19 18 34 34 H 1.09004 * 113.14784 * 32.84837 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0138 -2.6149 -0.0001 13 6 4.4405 -3.1973 -1.1781 14 6 4.9019 -4.5005 -1.1788 15 6 4.9371 -5.2246 -0.0011 16 6 4.5107 -4.6472 1.1790 17 6 4.0478 -3.3392 1.1823 18 8 3.6291 -2.7684 2.3424 19 6 3.8158 -3.5234 3.5413 20 6 2.5326 -4.1954 4.0353 21 16 3.1020 -4.0127 5.7490 22 6 3.8432 -2.6549 4.8012 23 1 -0.4850 0.8400 0.0004 24 1 5.0081 -0.4308 -1.1900 25 1 3.6783 -0.9579 -2.0384 26 1 4.4143 -2.6338 -2.0991 27 1 5.2353 -4.9538 -2.1006 28 1 5.2942 -6.2439 -0.0050 29 1 4.5381 -5.2133 2.0983 30 1 4.6605 -4.2090 3.4750 31 1 1.6349 -3.6167 3.8180 32 1 2.4453 -5.2354 3.7209 33 1 4.8528 -2.4055 5.1278 34 1 3.1990 -1.7784 4.7314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = 22.007560 kcal Electronic energy + Delta-G solvation = -18076.233602 eV Core-core repulsion = 15294.715497 eV Total energy + Delta-G solvation = -2781.518105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06525 -37.78791 -34.84935 -34.40526 -31.86435 -29.71270 -29.27731 -26.43199 -26.29030 -23.49406 -22.64023 -20.94921 -19.86208 -18.19618 -16.89133 -16.47927 -15.64038 -15.49793 -15.27168 -14.69214 -14.59253 -14.07353 -13.66096 -13.40677 -13.35010 -12.94658 -12.57936 -12.30039 -11.94097 -11.71678 -11.45342 -11.12942 -10.88063 -10.70063 -10.60944 -10.46367 -10.16895 -9.79532 -9.30053 -8.49947 -8.36344 -7.93637 -7.71232 -7.62410 -5.96677 -4.05317 1.60104 1.74910 1.75482 1.88386 3.48409 3.59464 3.63174 3.76443 4.10892 4.32603 4.61303 4.68415 4.78814 5.13144 5.16495 5.25676 5.29750 5.31042 5.41982 5.57767 5.67911 5.73706 5.90385 5.98228 6.02241 6.42028 6.64114 6.71540 6.86432 7.09194 7.19109 7.64786 7.81555 8.14840 8.33198 8.69851 9.03053 9.66562 11.12947 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.008026 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.046325 B = 3488.028309 C = 4806.346441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.081 3.919 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.223 3.777 10 H 0.056 0.944 11 N -0.842 5.842 12 C -0.091 4.091 13 C -0.097 4.097 14 C -0.155 4.155 15 C -0.105 4.105 16 C -0.212 4.212 17 C 0.130 3.870 18 O -0.269 6.269 19 C 0.079 3.921 20 C -0.102 4.102 21 S -0.280 6.280 22 C -0.079 4.079 23 H 0.262 0.738 24 H 0.311 0.689 25 H 0.334 0.666 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -8.715 4.390 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.122 4.122 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.250 1.250 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.087 0.913 9 C 0.113 3.887 10 H 0.074 0.926 11 N -0.373 5.373 12 C -0.094 4.094 13 C -0.115 4.115 14 C -0.173 4.173 15 C -0.123 4.123 16 C -0.230 4.230 17 C 0.084 3.916 18 O -0.182 6.182 19 C 0.019 3.981 20 C -0.250 4.250 21 S -0.055 6.055 22 C -0.227 4.227 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.149 0.851 26 H 0.141 0.859 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.033 -8.373 6.025 14.390 hybrid contribution 0.810 0.026 -1.186 1.436 sum 10.843 -8.347 4.839 14.514 Atomic orbital electron populations 1.69953 1.06756 1.27210 1.49966 1.24993 0.94571 0.99944 0.92739 0.85880 0.78463 0.80929 0.77922 1.20776 1.24958 1.19986 1.20638 0.86982 0.94370 1.52301 0.91314 1.18566 0.96435 0.83455 0.90208 0.92650 1.59360 1.12965 1.58639 1.06298 1.20697 0.98235 1.00433 0.90054 1.20835 0.98466 0.94972 0.97242 1.20934 1.03556 0.95058 0.97752 1.20707 1.00183 0.99126 0.92307 1.21133 1.07578 0.95062 0.99264 1.18801 0.95316 0.91295 0.86191 1.86416 1.76865 1.42864 1.12075 1.23937 0.96996 0.93062 0.84128 1.25116 1.03269 1.05992 0.90652 1.88864 1.65005 1.36267 1.15340 1.24587 1.05550 1.00226 0.92312 0.92828 0.87742 0.85102 0.85875 0.86712 0.86681 0.86175 0.86832 0.85926 0.88253 0.87886 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.94 23.85 26.03 -169.99 -4.42 19.42 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 6 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 7 C -0.50 -13.94 9.29 -34.44 -0.32 -14.26 16 8 H 0.07 2.11 7.98 -52.49 -0.42 1.69 16 9 C 0.22 5.07 2.00 -70.02 -0.14 4.93 16 10 H 0.06 1.35 6.91 -51.93 -0.36 0.99 16 11 N -0.84 -17.20 6.24 -6.65 -0.04 -17.24 16 12 C -0.09 -1.80 5.03 -104.48 -0.53 -2.33 16 13 C -0.10 -1.65 9.25 -39.60 -0.37 -2.01 16 14 C -0.15 -2.28 10.04 -39.56 -0.40 -2.68 16 15 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 16 C -0.21 -3.20 9.00 -39.43 -0.35 -3.56 16 17 C 0.13 2.37 6.64 -39.22 -0.26 2.11 16 18 O -0.27 -4.89 9.34 -19.44 -0.18 -5.07 16 19 C 0.08 1.07 3.26 -26.68 -0.09 0.98 16 20 C -0.10 -1.35 7.79 37.18 0.29 -1.06 16 21 S -0.28 -3.64 24.80 -107.50 -2.67 -6.31 16 22 C -0.08 -0.98 7.79 37.18 0.29 -0.69 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.31 5.41 9.06 -39.29 -0.36 5.05 16 25 H 0.33 6.47 7.29 -39.29 -0.29 6.19 16 26 H 0.12 1.92 6.25 -52.49 -0.33 1.60 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 29 H 0.12 1.50 5.98 -52.49 -0.31 1.19 16 30 H 0.11 1.32 6.08 -51.93 -0.32 1.01 16 31 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 293.25 15.07 4.42 4.42 Total: -1.00 -31.55 293.25 -8.57 -40.12 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.08 Total: 9.74 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.37 Total: -18.21 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.73 Total: -44.12 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.18 Total: -5.07 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.42 Total: 19.42 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.67 Total: -6.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.55 -8.57 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.129 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds