Wall clock time and date at job start Mon Mar 30 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00245 * 2 1 4 4 H 1.48492 * 109.47429 * 270.00728 * 3 2 1 5 5 H 1.48503 * 109.46834 * 30.00542 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.00213 * 3 2 1 7 7 C 1.37883 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47459 * 59.99371 * 9 7 2 11 11 N 1.46904 * 109.46784 * 299.99147 * 9 7 2 12 12 C 1.50697 * 109.46988 * 179.97438 * 9 7 2 13 13 C 1.38170 * 120.02701 * 99.99534 * 12 9 7 14 14 C 1.38250 * 120.05323 * 179.97438 * 13 12 9 15 15 C 1.38288 * 120.11100 * 0.02562 * 14 13 12 16 16 C 1.38123 * 120.05800 * 0.02562 * 15 14 13 17 17 C 1.38705 * 120.03096 * 280.01745 * 12 9 7 18 18 O 1.35906 * 120.05247 * 359.95479 * 17 12 9 19 19 C 1.42898 * 116.99862 * 186.07413 * 18 17 12 20 20 C 1.53047 * 113.15459 * 257.95409 * 19 18 17 21 21 S 1.81502 * 89.86285 * 211.86958 * 20 19 18 22 22 C 1.53050 * 113.14944 * 157.52827 * 19 18 17 23 23 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 24 24 H 1.00904 * 111.00064 * 176.04533 * 11 9 7 25 25 H 1.00898 * 111.00423 * 300.00435 * 11 9 7 26 26 H 1.07998 * 119.97517 * 0.02562 * 13 12 9 27 27 H 1.08000 * 119.94286 * 180.02562 * 14 13 12 28 28 H 1.08006 * 119.96953 * 179.74452 * 15 14 13 29 29 H 1.07995 * 120.02625 * 179.97438 * 16 15 14 30 30 H 1.08996 * 112.49697 * 27.74622 * 19 18 17 31 31 H 1.08997 * 113.14829 * 327.11678 * 20 19 18 32 32 H 1.08996 * 113.14082 * 96.59476 * 20 19 18 33 33 H 1.09002 * 113.14484 * 263.40864 * 22 19 18 34 34 H 1.09004 * 113.14784 * 32.84837 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0138 -2.6149 -0.0001 13 6 4.4405 -3.1973 -1.1781 14 6 4.9019 -4.5005 -1.1788 15 6 4.9371 -5.2246 -0.0011 16 6 4.5107 -4.6472 1.1790 17 6 4.0478 -3.3392 1.1823 18 8 3.6291 -2.7684 2.3424 19 6 3.8158 -3.5234 3.5413 20 6 2.5326 -4.1954 4.0353 21 16 3.1020 -4.0127 5.7490 22 6 3.8432 -2.6549 4.8012 23 1 -0.4850 0.8400 0.0004 24 1 5.0081 -0.4308 -1.1900 25 1 3.6783 -0.9579 -2.0384 26 1 4.4143 -2.6338 -2.0991 27 1 5.2353 -4.9538 -2.1006 28 1 5.2942 -6.2439 -0.0050 29 1 4.5381 -5.2133 2.0983 30 1 4.6605 -4.2090 3.4750 31 1 1.6349 -3.6167 3.8180 32 1 2.4453 -5.2354 3.7209 33 1 4.8528 -2.4055 5.1278 34 1 3.1990 -1.7784 4.7314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:18 Heat of formation + Delta-G solvation = 0.701453 kcal Electronic energy + Delta-G solvation = -18077.157504 eV Core-core repulsion = 15294.715497 eV Total energy + Delta-G solvation = -2782.442007 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31132 -39.03398 -36.49277 -35.54756 -33.96736 -30.99670 -30.61212 -28.27519 -27.42034 -24.84943 -24.07692 -22.18770 -21.32983 -19.40438 -18.96944 -17.59152 -16.93812 -16.82705 -16.59078 -16.27245 -15.87323 -15.78473 -14.93468 -14.87793 -14.62903 -14.25531 -14.02941 -13.76295 -13.57026 -12.92074 -12.78786 -12.68758 -12.49904 -12.19678 -11.84388 -11.74842 -11.64072 -11.45980 -11.41356 -10.71194 -9.66081 -9.36047 -8.98369 -8.93700 -8.20187 -6.30518 0.48607 0.54903 0.67119 0.70631 1.51186 1.57916 1.71674 2.34357 2.55149 2.90775 3.14666 3.22531 3.59234 3.72117 3.99744 4.05519 4.19219 4.24495 4.27801 4.30701 4.47707 4.56889 4.59853 4.73546 4.84578 5.04757 5.19235 5.45146 5.51714 5.64641 5.78912 5.99644 6.17440 6.46323 6.64257 6.80672 7.02135 7.44335 8.93272 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.008026 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.046325 B = 3488.028309 C = 4806.346441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.025 3.975 3 Si 0.999 3.001 4 H -0.276 1.276 5 H -0.326 1.326 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.023 0.977 9 C 0.235 3.765 10 H 0.036 0.964 11 N -0.845 5.845 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.155 4.155 15 C -0.095 4.095 16 C -0.210 4.210 17 C 0.111 3.889 18 O -0.302 6.302 19 C 0.077 3.923 20 C -0.104 4.104 21 S -0.275 6.275 22 C -0.077 4.077 23 H 0.262 0.738 24 H 0.334 0.666 25 H 0.341 0.659 26 H 0.131 0.869 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.502 -10.243 4.180 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.173 4.173 3 Si 0.829 3.171 4 H -0.201 1.201 5 H -0.257 1.257 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.042 0.958 9 C 0.125 3.875 10 H 0.054 0.946 11 N -0.378 5.378 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.173 4.173 15 C -0.112 4.112 16 C -0.228 4.228 17 C 0.065 3.935 18 O -0.216 6.216 19 C 0.019 3.981 20 C -0.252 4.252 21 S -0.050 6.050 22 C -0.225 4.225 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.156 0.844 26 H 0.148 0.852 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.763 -9.917 5.814 17.177 hybrid contribution -0.010 0.336 -1.100 1.150 sum 12.753 -9.582 4.714 16.634 Atomic orbital electron populations 1.70088 1.08455 1.27873 1.52707 1.25809 0.95136 1.03389 0.92981 0.84870 0.77375 0.76813 0.78035 1.20143 1.25707 1.18838 1.20851 0.89945 0.92186 1.50336 0.95835 1.18063 0.93061 0.86142 0.90197 0.94595 1.59018 1.14693 1.58366 1.05674 1.20517 1.01656 0.99324 0.92181 1.21019 0.98301 0.96290 0.96499 1.21320 1.02430 0.93976 0.99532 1.21232 0.98007 1.00608 0.91387 1.21449 1.06483 0.93817 1.01096 1.19044 0.95975 0.92593 0.85868 1.86364 1.77358 1.44583 1.13280 1.24228 0.97698 0.93403 0.82811 1.25046 1.02403 1.06575 0.91187 1.88834 1.64893 1.36270 1.14991 1.24576 1.06567 0.99517 0.91876 0.92932 0.85296 0.84364 0.85165 0.83494 0.82774 0.83458 0.84270 0.88354 0.86600 0.85528 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 2 C 0.02 1.48 5.47 84.66 0.46 1.95 16 3 Si 1.00 50.13 26.03 68.60 1.79 51.92 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.33 -16.61 7.11 99.48 0.71 -15.90 16 6 H -0.26 -12.61 6.54 99.48 0.65 -11.96 16 7 C -0.49 -28.35 9.29 25.60 0.24 -28.12 16 8 H 0.02 1.52 7.98 -2.92 -0.02 1.50 16 9 C 0.24 10.83 2.00 43.42 0.09 10.91 16 10 H 0.04 1.78 6.91 -2.39 -0.02 1.77 16 11 N -0.85 -33.75 6.24 -174.95 -1.09 -34.84 16 12 C -0.13 -5.25 5.03 -19.77 -0.10 -5.35 16 13 C -0.10 -3.33 9.25 22.26 0.21 -3.12 16 14 C -0.15 -3.99 10.04 22.28 0.22 -3.77 16 15 C -0.09 -2.26 10.04 22.25 0.22 -2.03 16 16 C -0.21 -5.73 9.00 22.37 0.20 -5.53 16 17 C 0.11 3.96 6.64 22.50 0.15 4.11 16 18 O -0.30 -11.05 9.34 -92.49 -0.86 -11.91 16 19 C 0.08 2.02 3.26 30.63 0.10 2.12 16 20 C -0.10 -2.70 7.79 72.00 0.56 -2.14 16 21 S -0.28 -6.83 24.80 -56.49 -1.40 -8.23 16 22 C -0.08 -1.87 7.79 72.00 0.56 -1.31 16 23 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.33 11.03 9.06 -89.69 -0.81 10.21 16 25 H 0.34 12.92 7.29 -89.70 -0.65 12.27 16 26 H 0.13 3.86 6.25 -2.91 -0.02 3.84 16 27 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.11 5.98 -2.91 -0.02 3.09 16 30 H 0.14 2.86 6.08 -2.39 -0.01 2.84 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -70.89 293.25 1.26 -69.63 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.39 Total: 26.11 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 2.91 Total: -32.28 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -0.79 Total: -95.24 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.86 Total: -11.91 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.79 Total: 51.92 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.40 Total: -8.23 kcal Total: -70.89 1.26 -69.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.336 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds