Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99354 * 2 1 4 4 H 1.48510 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47561 * 299.99571 * 3 2 1 6 6 H 1.48504 * 109.47218 * 60.00325 * 3 2 1 7 7 C 1.37876 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99845 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.87517 * 58.98228 * 9 7 2 11 11 C 1.54327 * 110.00954 * 297.88150 * 9 7 2 12 12 C 1.55155 * 102.94152 * 262.70523 * 11 9 7 13 13 C 1.55128 * 101.48988 * 324.33242 * 12 11 9 14 14 N 1.47021 * 109.87903 * 179.97438 * 9 7 2 15 15 C 1.34774 * 125.64892 * 300.58728 * 14 9 7 16 16 O 1.21275 * 120.00008 * 0.02562 * 15 14 9 17 17 C 1.50703 * 119.99991 * 180.02562 * 15 14 9 18 18 C 1.50697 * 109.46867 * 180.02562 * 17 15 14 19 19 C 1.33387 * 125.20287 * 90.00407 * 18 17 15 20 20 C 1.38427 * 114.91991 * 179.75128 * 19 18 17 21 21 C 1.33381 * 114.92374 * 0.25034 * 20 19 18 22 22 S 1.75886 * 125.20508 * 270.13861 * 18 17 15 23 23 H 0.96999 * 120.00789 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.72124 * 21.07182 * 11 9 7 25 25 H 1.08996 * 110.71920 * 144.34570 * 11 9 7 26 26 H 1.09006 * 111.00306 * 82.57294 * 12 11 9 27 27 H 1.09002 * 111.00287 * 206.38538 * 12 11 9 28 28 H 1.08999 * 110.49478 * 278.45754 * 13 12 11 29 29 H 1.08999 * 110.34818 * 156.05756 * 13 12 11 30 30 H 1.09004 * 109.47081 * 60.00812 * 17 15 14 31 31 H 1.08991 * 109.47229 * 300.00718 * 17 15 14 32 32 H 1.08002 * 122.54190 * 0.02679 * 19 18 17 33 33 H 1.08001 * 122.53885 * 180.22673 * 20 19 18 34 34 H 1.07994 * 125.20771 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6088 -2.5561 -0.8781 11 6 0.3994 -2.6171 1.2820 12 6 1.2919 -3.4780 2.2145 13 6 1.9552 -4.4462 1.2000 14 7 2.1986 -3.6233 0.0005 15 6 3.1310 -3.8648 -0.9423 16 8 3.2389 -3.1199 -1.8931 17 6 4.0393 -5.0605 -0.8149 18 6 4.9830 -5.1018 -1.9891 19 6 6.1819 -4.5188 -2.0329 20 6 6.8744 -4.6976 -3.2181 21 6 6.2357 -5.4213 -4.1386 22 16 4.6705 -5.9233 -3.5126 23 1 -0.4851 0.8400 -0.0004 24 1 0.2209 -1.6343 1.7184 25 1 -0.5425 -3.1245 1.0736 26 1 2.0380 -2.8631 2.7180 27 1 0.6874 -4.0256 2.9376 28 1 1.2827 -5.2709 0.9639 29 1 2.8967 -4.8251 1.5976 30 1 3.4407 -5.9713 -0.7972 31 1 4.6125 -4.9846 0.1090 32 1 6.5839 -3.9540 -1.2048 33 1 7.8573 -4.2822 -3.3850 34 1 6.6208 -5.6627 -5.1183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = 0.265143 kcal Electronic energy + Delta-G solvation = -17825.700576 eV Core-core repulsion = 15043.239649 eV Total energy + Delta-G solvation = -2782.460927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21551 -37.60570 -36.31969 -32.78087 -31.86956 -30.42090 -28.38561 -26.73373 -24.52412 -23.36798 -22.04450 -20.14259 -19.10727 -18.39744 -16.84150 -16.54684 -16.20608 -15.37194 -14.96740 -14.67922 -14.07623 -13.86299 -12.85109 -12.76141 -12.52850 -12.43329 -12.37876 -12.02313 -11.85810 -11.75940 -11.26299 -10.99776 -10.82318 -10.57848 -10.49080 -10.30076 -10.06811 -9.83307 -9.21867 -8.94465 -8.38869 -8.36432 -8.24932 -7.55187 -5.99767 -4.02608 1.18199 1.83009 2.18895 2.93997 3.32726 3.40768 3.45322 3.51265 3.99458 4.49267 4.88802 5.18694 5.20086 5.32132 5.35857 5.39161 5.56882 5.70182 5.74466 5.76849 5.81611 6.11854 6.29526 6.31779 6.45787 6.46990 6.66933 6.88565 7.00358 7.20821 7.54258 7.72045 7.98748 8.28389 8.59123 8.98506 9.14953 9.61687 11.06874 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.006019 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.786073 B = 4650.594687 C = 5458.942157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.265 3.735 10 H 0.033 0.967 11 C -0.108 4.108 12 C -0.131 4.131 13 C 0.099 3.901 14 N -0.607 5.607 15 C 0.520 3.480 16 O -0.521 6.521 17 C -0.071 4.071 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.223 4.223 22 S 0.100 5.900 23 H 0.260 0.740 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -13.049 0.265 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.164 3.836 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.169 4.169 13 C -0.024 4.024 14 N -0.341 5.341 15 C 0.305 3.695 16 O -0.396 6.396 17 C -0.114 4.114 18 C -0.258 4.258 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.358 4.358 22 S 0.363 5.637 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.936 -13.376 -0.917 15.095 hybrid contribution 1.583 1.803 0.546 2.461 sum 8.519 -11.573 -0.371 14.375 Atomic orbital electron populations 1.69955 1.05746 1.26600 1.51169 1.24873 0.94885 0.99022 0.95335 0.86478 0.80216 0.83562 0.77422 1.19863 1.20998 1.21116 1.21282 0.93275 0.89821 1.49455 0.92383 1.19291 0.86424 0.83498 0.94366 0.94931 1.22579 0.95496 1.00248 0.96364 1.22771 0.99646 0.97639 0.96882 1.22265 0.99152 0.94143 0.86887 1.48832 1.35113 1.28323 1.21864 1.19681 0.80769 0.86176 0.82847 1.90720 1.69236 1.48357 1.31314 1.20239 0.96229 0.99002 0.95883 1.23867 0.98521 1.04971 0.98446 1.20048 0.94888 1.02093 0.99556 1.20086 1.01501 1.00977 0.93433 1.25499 0.98366 1.07913 1.04070 1.84098 1.17775 1.52987 1.08830 0.92981 0.88845 0.94023 0.91087 0.91866 0.92569 0.92217 0.88707 0.87754 0.84540 0.84608 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.95 55.43 0.66 -25.05 16 2 C 0.06 1.69 5.07 -17.82 -0.09 1.60 16 3 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.50 -14.17 7.93 -34.44 -0.27 -14.45 16 8 H 0.06 1.73 7.72 -52.49 -0.41 1.33 16 9 C 0.26 6.72 2.82 -68.11 -0.19 6.53 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.38 6.00 -24.90 -0.15 -2.53 16 12 C -0.13 -2.26 7.10 -24.46 -0.17 -2.43 16 13 C 0.10 1.61 6.71 -2.38 -0.02 1.59 16 14 N -0.61 -12.96 3.07 -164.15 -0.50 -13.47 16 15 C 0.52 11.06 7.56 -10.98 -0.08 10.98 16 16 O -0.52 -13.57 15.76 5.56 0.09 -13.48 16 17 C -0.07 -1.10 5.20 -29.03 -0.15 -1.25 16 18 C -0.14 -2.22 5.00 -36.00 -0.18 -2.40 16 19 C -0.14 -2.05 10.05 -41.21 -0.41 -2.46 16 20 C -0.13 -1.72 10.18 -41.21 -0.42 -2.14 16 21 C -0.22 -2.87 11.23 29.04 0.33 -2.55 16 22 S 0.10 1.43 23.33 -107.50 -2.51 -1.08 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.09 2.31 6.55 -51.93 -0.34 1.97 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.37 7.85 -51.93 -0.41 0.96 16 32 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -32.76 300.74 -9.05 -41.81 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.48 Total: -1.01 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.82 Total: -9.51 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.16 Total: -38.52 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.08 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.76 -9.05 -41.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.076 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds