Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99354 * 2 1 4 4 H 1.48510 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47561 * 299.99571 * 3 2 1 6 6 H 1.48504 * 109.47218 * 60.00325 * 3 2 1 7 7 C 1.37876 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99845 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.87517 * 58.98228 * 9 7 2 11 11 C 1.54327 * 110.00954 * 297.88150 * 9 7 2 12 12 C 1.55155 * 102.94152 * 262.70523 * 11 9 7 13 13 C 1.55128 * 101.48988 * 324.33242 * 12 11 9 14 14 N 1.47021 * 109.87903 * 179.97438 * 9 7 2 15 15 C 1.34774 * 125.64892 * 300.58728 * 14 9 7 16 16 O 1.21275 * 120.00008 * 0.02562 * 15 14 9 17 17 C 1.50703 * 119.99991 * 180.02562 * 15 14 9 18 18 C 1.50697 * 109.46867 * 180.02562 * 17 15 14 19 19 C 1.33387 * 125.20287 * 90.00407 * 18 17 15 20 20 C 1.38427 * 114.91991 * 179.75128 * 19 18 17 21 21 C 1.33381 * 114.92374 * 0.25034 * 20 19 18 22 22 S 1.75886 * 125.20508 * 270.13861 * 18 17 15 23 23 H 0.96999 * 120.00789 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.72124 * 21.07182 * 11 9 7 25 25 H 1.08996 * 110.71920 * 144.34570 * 11 9 7 26 26 H 1.09006 * 111.00306 * 82.57294 * 12 11 9 27 27 H 1.09002 * 111.00287 * 206.38538 * 12 11 9 28 28 H 1.08999 * 110.49478 * 278.45754 * 13 12 11 29 29 H 1.08999 * 110.34818 * 156.05756 * 13 12 11 30 30 H 1.09004 * 109.47081 * 60.00812 * 17 15 14 31 31 H 1.08991 * 109.47229 * 300.00718 * 17 15 14 32 32 H 1.08002 * 122.54190 * 0.02679 * 19 18 17 33 33 H 1.08001 * 122.53885 * 180.22673 * 20 19 18 34 34 H 1.07994 * 125.20771 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6088 -2.5561 -0.8781 11 6 0.3994 -2.6171 1.2820 12 6 1.2919 -3.4780 2.2145 13 6 1.9552 -4.4462 1.2000 14 7 2.1986 -3.6233 0.0005 15 6 3.1310 -3.8648 -0.9423 16 8 3.2389 -3.1199 -1.8931 17 6 4.0393 -5.0605 -0.8149 18 6 4.9830 -5.1018 -1.9891 19 6 6.1819 -4.5188 -2.0329 20 6 6.8744 -4.6976 -3.2181 21 6 6.2357 -5.4213 -4.1386 22 16 4.6705 -5.9233 -3.5126 23 1 -0.4851 0.8400 -0.0004 24 1 0.2209 -1.6343 1.7184 25 1 -0.5425 -3.1245 1.0736 26 1 2.0380 -2.8631 2.7180 27 1 0.6874 -4.0256 2.9376 28 1 1.2827 -5.2709 0.9639 29 1 2.8967 -4.8251 1.5976 30 1 3.4407 -5.9713 -0.7972 31 1 4.6125 -4.9846 0.1090 32 1 6.5839 -3.9540 -1.2048 33 1 7.8573 -4.2822 -3.3850 34 1 6.6208 -5.6627 -5.1183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -20.136226 kcal Electronic energy + Delta-G solvation = -17826.585246 eV Core-core repulsion = 15043.239649 eV Total energy + Delta-G solvation = -2783.345597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82552 -38.82086 -37.91410 -34.81429 -33.26932 -31.94434 -30.16804 -27.95476 -26.48601 -24.65155 -23.46875 -21.77483 -20.33342 -19.90467 -18.54221 -17.96997 -17.82129 -16.96581 -16.46834 -16.21866 -15.84147 -15.32380 -14.40692 -14.15716 -14.01147 -13.80782 -13.64526 -13.46381 -13.34181 -13.18312 -12.96017 -12.69914 -12.42581 -12.39725 -12.05248 -11.84203 -11.67811 -11.61674 -11.10121 -10.63674 -10.49790 -9.54217 -9.34829 -9.31575 -8.16253 -6.26557 0.08583 0.76227 1.12387 1.32048 1.35244 1.46266 1.84357 1.89825 2.35881 2.52128 3.11315 3.68063 3.91161 3.97503 4.20715 4.26432 4.34143 4.43890 4.50565 4.68847 4.73568 4.75753 4.85128 4.93148 5.22702 5.25444 5.39108 5.39814 5.43229 5.56763 5.61201 5.70059 5.96312 6.24256 6.70513 7.02753 7.35720 7.55251 8.88716 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.006019 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.786073 B = 4650.594687 C = 5458.942157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.035 0.965 9 C 0.263 3.737 10 H -0.023 1.023 11 C -0.103 4.103 12 C -0.119 4.119 13 C 0.096 3.904 14 N -0.615 5.615 15 C 0.509 3.491 16 O -0.583 6.583 17 C -0.055 4.055 18 C -0.169 4.169 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.214 4.214 22 S 0.083 5.917 23 H 0.263 0.737 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.531 -14.577 1.432 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.053 0.947 9 C 0.161 3.839 10 H -0.005 1.005 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.026 4.026 14 N -0.348 5.348 15 C 0.297 3.703 16 O -0.463 6.463 17 C -0.097 4.097 18 C -0.287 4.287 19 C -0.174 4.174 20 C -0.172 4.172 21 C -0.349 4.349 22 S 0.346 5.654 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.294 -14.943 0.294 17.093 hybrid contribution 1.160 2.280 0.103 2.560 sum 9.454 -12.663 0.397 15.807 Atomic orbital electron populations 1.70046 1.06681 1.27376 1.51509 1.25572 0.95765 1.01951 0.95139 0.85615 0.78598 0.80105 0.77959 1.20415 1.21046 1.19115 1.21412 0.92250 0.91806 1.49730 0.94680 1.19011 0.86850 0.84241 0.93822 1.00479 1.22340 0.96216 0.99909 0.95755 1.22759 0.98902 0.97126 0.96893 1.22623 1.01858 0.93706 0.84377 1.48924 1.34284 1.27900 1.23687 1.20804 0.80729 0.87117 0.81636 1.90673 1.70981 1.50921 1.33746 1.20192 0.95485 0.96821 0.97181 1.24041 0.99058 1.06450 0.99157 1.20369 0.95046 1.01549 1.00470 1.20388 1.02674 1.01265 0.92915 1.25903 0.97114 1.06805 1.05093 1.84101 1.19242 1.53144 1.08892 0.92747 0.91981 0.93419 0.91779 0.87614 0.89772 0.88152 0.85809 0.84876 0.84046 0.82079 0.79333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 11.95 21.45 0.26 -53.96 16 2 C 0.01 0.85 5.07 84.65 0.43 1.28 16 3 Si 0.95 46.63 29.54 68.60 2.03 48.65 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 5 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.51 -30.21 7.93 25.60 0.20 -30.01 16 8 H 0.03 2.17 7.72 -2.91 -0.02 2.15 16 9 C 0.26 13.82 2.82 44.60 0.13 13.94 16 10 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 11 C -0.10 -4.57 6.00 31.78 0.19 -4.38 16 12 C -0.12 -3.77 7.10 32.06 0.23 -3.54 16 13 C 0.10 2.79 6.71 86.92 0.58 3.37 16 14 N -0.62 -26.06 3.07 -791.63 -2.43 -28.49 16 15 C 0.51 21.65 7.56 87.66 0.66 22.31 16 16 O -0.58 -31.52 15.76 -3.01 -0.05 -31.57 16 17 C -0.06 -1.60 5.20 29.10 0.15 -1.44 16 18 C -0.17 -5.15 5.00 24.59 0.12 -5.03 16 19 C -0.14 -4.15 10.05 21.22 0.21 -3.94 16 20 C -0.14 -3.53 10.18 21.22 0.22 -3.31 16 21 C -0.21 -5.08 11.23 66.72 0.75 -4.34 16 22 S 0.08 2.30 23.33 -56.49 -1.32 0.98 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.06 3.13 6.55 -2.39 -0.02 3.11 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.16 7.48 -2.39 -0.02 2.14 16 30 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.13 3.02 7.85 -2.39 -0.02 3.00 16 32 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 33 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -76.32 300.74 3.45 -72.87 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.09 Total: 6.60 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 3.87 Total: -15.09 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.18 Total: -82.44 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.57 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.98 kcal Total: -76.32 3.45 -72.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.732 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds