Wall clock time and date at job start Mon Mar 30 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47190 * 264.81596 * 3 2 1 5 5 H 1.48508 * 109.47057 * 24.81647 * 3 2 1 6 6 H 1.48501 * 109.47213 * 144.81734 * 3 2 1 7 7 C 1.37875 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 4.56714 * 7 2 1 9 9 C 1.50696 * 120.00477 * 184.56545 * 7 2 1 10 10 H 1.09004 * 109.99988 * 334.01502 * 9 7 2 11 11 C 1.54328 * 109.88355 * 95.10878 * 9 7 2 12 12 C 1.55153 * 102.94254 * 141.61228 * 11 9 7 13 13 C 1.54908 * 101.58461 * 324.49958 * 12 11 9 14 14 N 1.47020 * 109.88556 * 212.92199 * 9 7 2 15 15 C 1.34774 * 125.65179 * 61.61641 * 14 9 7 16 16 O 1.21283 * 119.99976 * 0.02562 * 15 14 9 17 17 C 1.50697 * 120.00059 * 180.02562 * 15 14 9 18 18 C 1.50694 * 109.47385 * 179.97438 * 17 15 14 19 19 C 1.33396 * 125.20155 * 89.71725 * 18 17 15 20 20 C 1.38426 * 114.92006 * 179.86222 * 19 18 17 21 21 C 1.33386 * 114.92119 * 0.43318 * 20 19 18 22 22 S 1.75883 * 125.20741 * 270.03171 * 18 17 15 23 23 H 0.97001 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.72006 * 259.97923 * 11 9 7 25 25 H 1.09004 * 110.71798 * 23.24745 * 11 9 7 26 26 H 1.09001 * 111.00483 * 82.57474 * 12 11 9 27 27 H 1.08995 * 111.00404 * 206.42389 * 12 11 9 28 28 H 1.09006 * 110.37023 * 155.84445 * 13 12 11 29 29 H 1.08997 * 110.36699 * 278.17188 * 13 12 11 30 30 H 1.09006 * 109.47570 * 300.00256 * 17 15 14 31 31 H 1.09004 * 109.47411 * 60.00181 * 17 15 14 32 32 H 1.08001 * 122.53568 * 0.02562 * 19 18 17 33 33 H 1.08000 * 122.54073 * 180.20038 * 20 19 18 34 34 H 1.08000 * 125.20130 * 179.78679 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9831 -1.3943 5 1 1.3961 2.6818 0.5877 6 1 3.4876 1.4742 0.8067 7 6 2.0045 -1.1940 0.0005 8 1 1.4671 -2.1279 -0.0735 9 6 3.5079 -1.1961 0.1044 10 1 3.9095 -0.2589 -0.2810 11 6 3.9321 -1.3829 1.5765 12 6 5.1741 -2.3061 1.4658 13 6 4.7811 -3.2149 0.2745 14 7 4.0601 -2.3269 -0.6558 15 6 3.9287 -2.5200 -1.9832 16 8 3.3109 -1.7205 -2.6541 17 6 4.5493 -3.7294 -2.6337 18 6 4.2578 -3.7097 -4.1121 19 6 5.0231 -3.1315 -5.0391 20 6 4.5540 -3.2450 -6.3365 21 6 3.4032 -3.9076 -6.4621 22 16 2.8526 -4.4388 -4.8784 23 1 -0.4850 0.8400 0.0004 24 1 4.2011 -0.4264 2.0246 25 1 3.1404 -1.8682 2.1473 26 1 6.0706 -1.7293 1.2380 27 1 5.3085 -2.8909 2.3756 28 1 5.6727 -3.6211 -0.2032 29 1 4.1293 -4.0210 0.6112 30 1 5.6276 -3.7141 -2.4754 31 1 4.1302 -4.6342 -2.1932 32 1 5.9406 -2.6161 -4.7960 33 1 5.0781 -2.8255 -7.1825 34 1 2.8885 -4.0902 -7.3938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:43 Heat of formation + Delta-G solvation = 2.404717 kcal Electronic energy + Delta-G solvation = -17878.490171 eV Core-core repulsion = 15096.122023 eV Total energy + Delta-G solvation = -2782.368148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28643 -37.63184 -36.40508 -32.65888 -31.93115 -30.62917 -29.06827 -26.79315 -24.52428 -23.31302 -21.91660 -20.33368 -19.08071 -18.30530 -17.19809 -16.80891 -16.38586 -15.47927 -15.07397 -14.66373 -14.07488 -13.62922 -12.94636 -12.76638 -12.64707 -12.54948 -12.39728 -12.33171 -12.03200 -11.71050 -11.58590 -11.23197 -10.95235 -10.67021 -10.50412 -10.32309 -9.98754 -9.86196 -9.36973 -9.02290 -8.52957 -8.37366 -8.20351 -7.58426 -6.04815 -4.03032 1.20996 1.87616 2.24265 2.94645 3.32019 3.38478 3.43656 3.48309 3.91122 4.45607 4.88845 5.05830 5.17202 5.21192 5.32083 5.40654 5.45231 5.58228 5.64870 5.75074 5.75985 5.95854 6.10980 6.14704 6.30143 6.43990 6.47601 6.59881 6.68631 6.73467 7.08417 7.42981 7.65383 8.46670 8.52817 8.99468 9.11848 9.58481 11.08637 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.006550 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.094239 B = 4273.862265 C = 4977.005647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.073 0.927 9 C 0.232 3.768 10 H 0.033 0.967 11 C -0.127 4.127 12 C -0.137 4.137 13 C 0.100 3.900 14 N -0.606 5.606 15 C 0.521 3.479 16 O -0.513 6.513 17 C -0.070 4.070 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.224 4.224 22 S 0.113 5.887 23 H 0.264 0.736 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.376 -9.324 -4.966 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.131 3.869 10 H 0.051 0.949 11 C -0.166 4.166 12 C -0.175 4.175 13 C -0.024 4.024 14 N -0.341 5.341 15 C 0.307 3.693 16 O -0.387 6.387 17 C -0.112 4.112 18 C -0.261 4.261 19 C -0.168 4.168 20 C -0.163 4.163 21 C -0.360 4.360 22 S 0.377 5.623 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.582 -9.579 -4.919 15.097 hybrid contribution 1.524 1.709 -0.540 2.352 sum 12.106 -7.871 -5.458 15.437 Atomic orbital electron populations 1.69887 1.06273 1.26971 1.50048 1.24922 0.94677 0.98836 0.93903 0.86894 0.79919 0.83861 0.78983 1.19869 1.21461 1.19254 1.21011 0.88382 0.94706 1.50298 0.90903 1.19665 0.95048 0.85257 0.86890 0.94880 1.22953 0.95897 0.98708 0.99065 1.22773 0.98998 0.98431 0.97310 1.22183 0.95384 0.93730 0.91101 1.48873 1.53243 1.26198 1.05813 1.19715 0.81463 0.87000 0.81153 1.90741 1.40293 1.45851 1.61847 1.20227 1.02555 0.99045 0.89417 1.23879 0.98473 1.05622 0.98148 1.19997 1.02294 1.02468 0.92069 1.20055 0.96851 1.01798 0.97592 1.25541 1.01326 1.08276 1.00812 1.84262 1.24634 1.54864 0.98572 0.92610 0.91919 0.90340 0.91679 0.91018 0.92043 0.91984 0.87904 0.88526 0.84726 0.84701 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 3 Si 0.88 22.54 26.98 -169.99 -4.59 17.95 16 4 H -0.27 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.36 6.73 56.52 0.38 -5.98 16 7 C -0.51 -14.59 8.29 -34.44 -0.29 -14.87 16 8 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 9 C 0.23 5.55 2.44 -68.10 -0.17 5.39 16 10 H 0.03 0.85 5.41 -51.93 -0.28 0.57 16 11 C -0.13 -2.48 6.47 -24.90 -0.16 -2.64 16 12 C -0.14 -2.01 7.08 -24.59 -0.17 -2.18 16 13 C 0.10 1.52 6.69 -2.52 -0.02 1.50 16 14 N -0.61 -12.59 3.06 -164.31 -0.50 -13.09 16 15 C 0.52 11.09 7.63 -10.99 -0.08 11.01 16 16 O -0.51 -13.57 15.87 5.56 0.09 -13.49 16 17 C -0.07 -1.09 5.20 -29.04 -0.15 -1.24 16 18 C -0.14 -2.30 5.00 -36.00 -0.18 -2.48 16 19 C -0.14 -2.05 10.05 -41.20 -0.41 -2.47 16 20 C -0.13 -1.78 10.18 -41.21 -0.42 -2.20 16 21 C -0.22 -3.01 11.23 29.04 0.33 -2.68 16 22 S 0.11 1.73 23.33 -107.50 -2.51 -0.77 16 23 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 24 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 25 H 0.08 1.57 7.84 -51.93 -0.41 1.16 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.25 7.85 -51.93 -0.41 0.85 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -35.07 299.58 -8.48 -43.55 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.44 Total: -0.70 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.82 Total: -10.58 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.27 Total: -40.47 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.59 Total: 17.95 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.07 -8.48 -43.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.955 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds