Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47190 * 264.81596 * 3 2 1 5 5 H 1.48508 * 109.47057 * 24.81647 * 3 2 1 6 6 H 1.48501 * 109.47213 * 144.81734 * 3 2 1 7 7 C 1.37875 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 4.56714 * 7 2 1 9 9 C 1.50696 * 120.00477 * 184.56545 * 7 2 1 10 10 H 1.09004 * 109.99988 * 334.01502 * 9 7 2 11 11 C 1.54328 * 109.88355 * 95.10878 * 9 7 2 12 12 C 1.55153 * 102.94254 * 141.61228 * 11 9 7 13 13 C 1.54908 * 101.58461 * 324.49958 * 12 11 9 14 14 N 1.47020 * 109.88556 * 212.92199 * 9 7 2 15 15 C 1.34774 * 125.65179 * 61.61641 * 14 9 7 16 16 O 1.21283 * 119.99976 * 0.02562 * 15 14 9 17 17 C 1.50697 * 120.00059 * 180.02562 * 15 14 9 18 18 C 1.50694 * 109.47385 * 179.97438 * 17 15 14 19 19 C 1.33396 * 125.20155 * 89.71725 * 18 17 15 20 20 C 1.38426 * 114.92006 * 179.86222 * 19 18 17 21 21 C 1.33386 * 114.92119 * 0.43318 * 20 19 18 22 22 S 1.75883 * 125.20741 * 270.03171 * 18 17 15 23 23 H 0.97001 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.72006 * 259.97923 * 11 9 7 25 25 H 1.09004 * 110.71798 * 23.24745 * 11 9 7 26 26 H 1.09001 * 111.00483 * 82.57474 * 12 11 9 27 27 H 1.08995 * 111.00404 * 206.42389 * 12 11 9 28 28 H 1.09006 * 110.37023 * 155.84445 * 13 12 11 29 29 H 1.08997 * 110.36699 * 278.17188 * 13 12 11 30 30 H 1.09006 * 109.47570 * 300.00256 * 17 15 14 31 31 H 1.09004 * 109.47411 * 60.00181 * 17 15 14 32 32 H 1.08001 * 122.53568 * 0.02562 * 19 18 17 33 33 H 1.08000 * 122.54073 * 180.20038 * 20 19 18 34 34 H 1.08000 * 125.20130 * 179.78679 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9831 -1.3943 5 1 1.3961 2.6818 0.5877 6 1 3.4876 1.4742 0.8067 7 6 2.0045 -1.1940 0.0005 8 1 1.4671 -2.1279 -0.0735 9 6 3.5079 -1.1961 0.1044 10 1 3.9095 -0.2589 -0.2810 11 6 3.9321 -1.3829 1.5765 12 6 5.1741 -2.3061 1.4658 13 6 4.7811 -3.2149 0.2745 14 7 4.0601 -2.3269 -0.6558 15 6 3.9287 -2.5200 -1.9832 16 8 3.3109 -1.7205 -2.6541 17 6 4.5493 -3.7294 -2.6337 18 6 4.2578 -3.7097 -4.1121 19 6 5.0231 -3.1315 -5.0391 20 6 4.5540 -3.2450 -6.3365 21 6 3.4032 -3.9076 -6.4621 22 16 2.8526 -4.4388 -4.8784 23 1 -0.4850 0.8400 0.0004 24 1 4.2011 -0.4264 2.0246 25 1 3.1404 -1.8682 2.1473 26 1 6.0706 -1.7293 1.2380 27 1 5.3085 -2.8909 2.3756 28 1 5.6727 -3.6211 -0.2032 29 1 4.1293 -4.0210 0.6112 30 1 5.6276 -3.7141 -2.4754 31 1 4.1302 -4.6342 -2.1932 32 1 5.9406 -2.6161 -4.7960 33 1 5.0781 -2.8255 -7.1825 34 1 2.8885 -4.0902 -7.3938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -21.419081 kcal Electronic energy + Delta-G solvation = -17879.523249 eV Core-core repulsion = 15096.122023 eV Total energy + Delta-G solvation = -2783.401226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86047 -38.84494 -37.93700 -34.77084 -33.37991 -32.03334 -30.81738 -27.99634 -26.36184 -24.59913 -23.34985 -21.77487 -20.27648 -19.88890 -19.28516 -18.07329 -17.87996 -16.92198 -16.48487 -16.27653 -15.70556 -15.20380 -14.73784 -14.29145 -14.03586 -13.95775 -13.68668 -13.58982 -13.29050 -13.23619 -13.14366 -12.91486 -12.42822 -12.20713 -11.96547 -11.82314 -11.65331 -11.62147 -11.27230 -10.80990 -10.66220 -9.54806 -9.37365 -9.30048 -8.33712 -6.34630 0.08429 0.76062 1.13960 1.23246 1.32174 1.36699 1.82423 1.90801 2.28776 2.43142 3.08019 3.66906 3.87693 3.91333 4.17921 4.24070 4.27583 4.34506 4.47770 4.54377 4.69016 4.73401 4.77953 4.87782 5.08596 5.16642 5.21919 5.23648 5.38672 5.44842 5.56943 5.62613 5.77091 6.25349 6.62078 6.92262 7.29894 7.51874 8.84310 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.006550 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.094239 B = 4273.862265 C = 4977.005647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.290 1.290 5 H -0.279 1.279 6 H -0.231 1.231 7 C -0.502 4.502 8 H 0.021 0.979 9 C 0.226 3.774 10 H 0.017 0.983 11 C -0.127 4.127 12 C -0.120 4.120 13 C 0.092 3.908 14 N -0.615 5.615 15 C 0.509 3.491 16 O -0.580 6.580 17 C -0.055 4.055 18 C -0.169 4.169 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.215 4.215 22 S 0.061 5.939 23 H 0.264 0.736 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.184 -9.866 -4.688 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.154 1.154 7 C -0.541 4.541 8 H 0.039 0.961 9 C 0.123 3.877 10 H 0.034 0.966 11 C -0.165 4.165 12 C -0.158 4.158 13 C -0.030 4.030 14 N -0.348 5.348 15 C 0.297 3.703 16 O -0.460 6.460 17 C -0.096 4.096 18 C -0.287 4.287 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.351 4.351 22 S 0.325 5.675 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.132 0.868 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 14.443 -10.173 -4.593 18.253 hybrid contribution 0.316 1.780 -0.702 1.939 sum 14.759 -8.393 -5.295 17.785 Atomic orbital electron populations 1.70046 1.08182 1.27871 1.52814 1.25822 0.95493 1.02912 0.94134 0.85884 0.80076 0.79219 0.78481 1.21639 1.20431 1.15420 1.21262 0.91454 0.92489 1.48866 0.96060 1.19603 0.91611 0.86293 0.90202 0.96560 1.22776 0.98130 1.00557 0.95071 1.22794 0.96885 0.97484 0.98603 1.22591 0.96679 0.93105 0.90622 1.48923 1.53148 1.26241 1.06459 1.20823 0.80490 0.87869 0.81098 1.90700 1.43269 1.48534 1.63447 1.20199 1.04483 0.96327 0.88629 1.24052 0.98701 1.07169 0.98753 1.20388 1.02657 1.01339 0.92497 1.20435 0.96931 1.01525 0.98130 1.25896 1.01263 1.07461 1.00433 1.84404 1.26037 1.56023 1.01041 0.92666 0.91069 0.91779 0.89720 0.87296 0.87300 0.91497 0.83737 0.86789 0.82999 0.81677 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.88 13.96 21.45 0.30 -62.58 16 2 C 0.01 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.94 47.58 26.98 68.60 1.85 49.43 16 4 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.23 -10.23 6.73 99.48 0.67 -9.56 16 7 C -0.50 -30.22 8.29 25.60 0.21 -30.01 16 8 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 9 C 0.23 10.72 2.44 44.60 0.11 10.83 16 10 H 0.02 0.84 5.41 -2.38 -0.01 0.82 16 11 C -0.13 -4.65 6.47 31.78 0.21 -4.44 16 12 C -0.12 -2.94 7.08 31.98 0.23 -2.71 16 13 C 0.09 2.42 6.69 86.85 0.58 3.01 16 14 N -0.61 -24.71 3.06 -792.16 -2.42 -27.13 16 15 C 0.51 21.44 7.63 87.66 0.67 22.11 16 16 O -0.58 -31.64 15.87 -3.04 -0.05 -31.69 16 17 C -0.06 -1.58 5.20 29.10 0.15 -1.43 16 18 C -0.17 -5.24 5.00 24.59 0.12 -5.11 16 19 C -0.14 -3.83 10.05 21.22 0.21 -3.62 16 20 C -0.14 -3.45 10.18 21.22 0.22 -3.24 16 21 C -0.22 -5.47 11.23 66.72 0.75 -4.72 16 22 S 0.06 1.90 23.33 -56.49 -1.32 0.58 16 23 H 0.26 16.43 8.31 -92.71 -0.77 15.65 16 24 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 25 H 0.06 2.51 7.84 -2.39 -0.02 2.49 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 1.92 7.48 -2.38 -0.02 1.90 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.14 2.87 7.85 -2.38 -0.02 2.85 16 31 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -83.87 299.58 3.34 -80.53 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.05 Total: 8.88 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 3.92 Total: -18.02 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -2.12 Total: -89.72 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.85 Total: 49.43 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -83.87 3.34 -80.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.110 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds