Wall clock time and date at job start Mon Mar 30 2020 06:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33810 * 124.52121 * 2 1 4 4 C 1.37480 * 115.09727 * 179.75245 * 3 2 1 5 5 C 1.36644 * 113.29617 * 0.49195 * 4 3 2 6 6 C 1.46580 * 125.45659 * 179.80174 * 5 4 3 7 7 O 1.21705 * 120.00123 * 4.77944 * 6 5 4 8 8 N 1.34779 * 120.00080 * 184.77938 * 6 5 4 9 9 C 1.47428 * 125.64859 * 174.98584 * 8 6 5 10 10 C 1.54904 * 104.83241 * 155.90451 * 9 8 6 11 11 C 1.55161 * 101.58240 * 37.00835 * 10 9 8 12 12 H 1.08997 * 110.72426 * 83.03680 * 11 10 9 13 13 C 1.50700 * 110.71838 * 206.13635 * 11 10 9 14 14 H 1.08002 * 120.00490 * 2.05981 * 13 11 10 15 15 C 1.37880 * 119.99749 * 182.05731 * 13 11 10 16 16 N 1.31514 * 120.00289 * 5.02579 * 15 13 11 17 17 Si 1.86800 * 119.99983 * 185.01900 * 15 13 11 18 18 H 1.48499 * 109.47267 * 85.00356 * 17 15 13 19 19 H 1.48504 * 109.47324 * 325.00259 * 17 15 13 20 20 H 1.48494 * 109.47418 * 205.00427 * 17 15 13 21 21 C 1.47320 * 125.61547 * 355.20111 * 8 6 5 22 22 S 1.70621 * 124.51857 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46991 * 299.99478 * 1 2 3 25 25 H 1.08992 * 109.47252 * 60.00024 * 1 2 3 26 26 H 1.07997 * 122.45109 * 0.04495 * 3 2 1 27 27 H 1.08005 * 123.34936 * 180.29965 * 4 3 2 28 28 H 1.08999 * 110.36947 * 37.06090 * 9 8 6 29 29 H 1.09008 * 110.45522 * 274.78879 * 9 8 6 30 30 H 1.09000 * 111.00754 * 278.93511 * 10 9 8 31 31 H 1.09005 * 111.03756 * 155.09451 * 10 9 8 32 32 H 0.96998 * 120.00079 * 179.97438 * 16 15 13 33 33 H 1.09005 * 110.06000 * 61.68269 * 21 8 6 34 34 H 1.09000 * 109.84784 * 300.42625 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0054 5 6 3.9492 -0.4492 -0.0010 6 6 5.3123 -0.9884 -0.0016 7 8 6.2644 -0.2360 0.0917 8 7 5.5112 -2.3173 -0.1054 9 6 6.8212 -2.9834 -0.2234 10 6 6.5839 -4.4209 0.3027 11 6 5.1558 -4.7150 -0.2278 12 1 5.1910 -5.0529 -1.2635 13 6 4.4640 -5.7343 0.6402 14 1 4.9613 -6.1247 1.5159 15 6 3.1960 -6.1686 0.3166 16 7 2.6295 -5.7695 -0.8011 17 14 2.2829 -7.3242 1.4656 18 1 1.5901 -6.5339 2.5147 19 1 3.2494 -8.2539 2.1036 20 1 1.2833 -8.1037 0.6921 21 6 4.4549 -3.3441 -0.1242 22 16 2.4739 -1.4058 -0.0006 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8429 2.0964 0.0007 27 1 4.3550 1.6702 0.0108 28 1 7.5632 -2.4725 0.3901 29 1 7.1433 -3.0087 -1.2645 30 1 6.6091 -4.4475 1.3921 31 1 7.3086 -5.1169 -0.1199 32 1 1.7377 -6.0753 -1.0290 33 1 3.8036 -3.1947 -0.9854 34 1 3.8733 -3.2935 0.7962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259996863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:32 Heat of formation + Delta-G solvation = -13.124667 kcal Electronic energy + Delta-G solvation = -17842.351218 eV Core-core repulsion = 15059.309665 eV Total energy + Delta-G solvation = -2783.041553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39478 -37.70598 -36.48007 -33.00115 -31.95190 -30.68434 -28.46423 -26.80638 -24.99821 -23.51190 -22.39254 -20.40061 -19.77611 -18.00291 -17.38435 -16.53603 -15.70639 -15.48241 -15.03243 -14.52341 -14.22406 -13.85568 -13.47190 -12.95425 -12.67584 -12.55812 -12.18860 -12.12879 -11.79355 -11.68025 -11.62132 -11.54853 -11.02825 -10.81756 -10.63930 -10.38159 -9.82038 -9.62507 -9.34418 -9.19014 -8.59937 -8.44678 -8.25838 -7.85773 -6.21398 -4.25155 0.85405 1.87713 2.31092 2.66289 3.21493 3.29024 3.31585 3.57023 3.66375 4.30385 4.94750 5.06118 5.13294 5.31229 5.52873 5.53843 5.63946 5.74631 5.82051 5.84627 5.96836 6.13968 6.22314 6.31729 6.42213 6.58317 6.63943 6.71445 6.77110 6.88607 7.15169 7.57546 7.77000 8.08772 8.20413 8.60677 8.79186 9.40699 10.88256 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.008037 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.493802 B = 3483.055464 C = 4912.687522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.237 4.237 3 C -0.163 4.163 4 C -0.066 4.066 5 C -0.269 4.269 6 C 0.596 3.404 7 O -0.557 6.557 8 N -0.611 5.611 9 C 0.108 3.892 10 C -0.129 4.129 11 C 0.050 3.950 12 H 0.049 0.951 13 C -0.518 4.518 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.286 1.286 21 C 0.098 3.902 22 S 0.274 5.726 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 8.160 0.480 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.356 4.356 3 C -0.194 4.194 4 C -0.100 4.100 5 C -0.389 4.389 6 C 0.385 3.615 7 O -0.439 6.439 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.167 4.167 11 C 0.031 3.969 12 H 0.067 0.933 13 C -0.556 4.556 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.211 1.211 21 C -0.025 4.025 22 S 0.544 5.456 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.871 7.032 0.417 7.607 hybrid contribution -0.489 1.046 0.526 1.269 sum -3.361 8.078 0.943 8.800 Atomic orbital electron populations 1.20310 0.88085 1.02975 1.02609 1.24830 1.01989 1.00686 1.08111 1.19772 0.92590 0.99138 1.07897 1.20577 0.95950 0.94946 0.98523 1.24662 0.97537 0.98160 1.18586 1.16638 0.86776 0.81106 0.76999 1.90745 1.42319 1.57934 1.52920 1.48791 1.10282 1.04991 1.70259 1.22226 0.84887 0.93897 1.00370 1.22902 0.99981 0.93047 1.00800 1.19680 0.88934 0.90135 0.98191 0.93251 1.21019 1.00552 1.23373 1.10662 0.91966 1.25014 0.97661 0.96024 0.94950 1.69938 1.15426 1.44802 1.22060 0.86623 0.79719 0.80937 0.80917 1.20393 1.19794 1.21147 1.22847 0.89573 0.88927 1.01156 1.84514 0.92612 1.03455 1.64998 0.91337 0.90834 0.90805 0.84841 0.83671 0.91450 0.92090 0.91500 0.91147 0.92601 0.91306 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.33 36.01 0.37 -0.54 16 2 C -0.24 -3.43 6.28 -35.86 -0.23 -3.65 16 3 C -0.16 -2.31 10.00 -41.41 -0.41 -2.73 16 4 C -0.07 -1.08 10.01 -40.43 -0.40 -1.48 16 5 C -0.27 -5.02 6.38 -36.80 -0.23 -5.25 16 6 C 0.60 12.54 7.81 -12.90 -0.10 12.44 16 7 O -0.56 -12.73 17.08 5.18 0.09 -12.64 16 8 N -0.61 -12.70 3.33 -171.85 -0.57 -13.27 16 9 C 0.11 2.04 6.93 -2.53 -0.02 2.02 16 10 C -0.13 -2.48 6.51 -24.58 -0.16 -2.64 16 11 C 0.05 1.14 2.71 -89.94 -0.24 0.90 16 12 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.52 -12.95 8.34 -34.44 -0.29 -13.24 16 14 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 15 C 0.07 1.69 5.34 -17.82 -0.10 1.60 16 16 N -0.89 -23.05 13.00 55.43 0.72 -22.33 16 17 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.10 2.14 4.34 -2.90 -0.01 2.13 16 22 S 0.27 4.75 18.39 -107.50 -1.98 2.77 16 23 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.15 2.21 8.06 -52.48 -0.42 1.78 16 28 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.07 1.56 6.83 -51.93 -0.35 1.20 16 34 H 0.07 1.56 6.69 -51.93 -0.35 1.21 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -27.93 298.16 -8.55 -36.48 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.46 Total: 0.22 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.82 Total: -10.46 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.15 Total: -35.60 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.98 Total: 2.77 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.93 -8.55 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.358 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds