Wall clock time and date at job start Mon Mar 30 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34845 * 125.88833 * 2 1 4 4 C 1.40883 * 107.41891 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.29413 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47206 * 270.00441 * 5 4 3 7 7 C 1.35218 * 127.23414 * 269.68470 * 6 5 4 8 8 Cl 1.73602 * 126.32575 * 0.02562 * 7 6 5 9 9 N 1.35945 * 107.34830 * 179.84757 * 7 6 5 10 10 H 0.96996 * 124.87058 * 180.14536 * 9 7 6 11 11 N 1.28475 * 110.27032 * 0.43592 * 9 7 6 12 12 C 1.32765 * 109.96576 * 359.72890 * 11 9 7 13 13 C 1.41423 * 126.56025 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99696 * 180.02562 * 13 12 11 15 15 C 1.39847 * 119.99722 * 359.97438 * 13 12 11 16 16 N 1.30898 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99913 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46833 * 60.00379 * 17 15 13 19 19 H 1.48490 * 109.47351 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47049 * 300.00599 * 17 15 13 21 21 C 1.34854 * 107.41814 * 0.02562 * 4 3 2 22 22 N 1.36343 * 108.21624 * 0.26031 * 21 4 3 23 23 H 0.96994 * 125.63652 * 179.73195 * 22 21 4 24 24 H 1.09005 * 109.46816 * 89.99921 * 1 2 3 25 25 H 1.09006 * 109.47039 * 209.99215 * 1 2 3 26 26 H 1.08995 * 109.47256 * 329.99496 * 1 2 3 27 27 H 1.08010 * 126.29114 * 0.04613 * 3 2 1 28 28 H 1.08994 * 109.47152 * 30.00060 * 5 4 3 29 29 H 1.08999 * 109.47294 * 150.00655 * 5 4 3 30 30 H 0.97002 * 119.99992 * 179.97438 * 16 15 13 31 31 H 1.08002 * 125.89007 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0006 5 6 4.8647 1.5156 -0.0003 6 6 5.2746 1.8065 -1.4210 7 6 6.1229 1.0884 -2.1912 8 17 6.9564 -0.3617 -1.7264 9 7 6.1992 1.7096 -3.3980 10 1 6.7379 1.4055 -4.1451 11 7 5.4604 2.7606 -3.4052 12 6 4.8554 2.8974 -2.2313 13 6 3.9641 3.9301 -1.8583 14 1 3.5306 3.9382 -0.8692 15 6 3.6449 4.9415 -2.7699 16 7 4.1707 4.9320 -3.9686 17 14 2.4671 6.3052 -2.2775 18 1 3.0179 7.0368 -1.1084 19 1 2.2952 7.2452 -3.4141 20 1 1.1515 5.7174 -1.9186 21 6 3.6090 -0.7022 -0.0015 22 7 2.3063 -1.1045 -0.0074 23 1 1.9990 -2.0245 -0.0130 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.9670 2.1207 0.0007 28 1 4.6481 2.4518 0.5142 29 1 5.6751 0.9980 0.5129 30 1 3.9491 5.6333 -4.6011 31 1 4.4722 -1.3513 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259997977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:56 Heat of formation + Delta-G solvation = 95.818666 kcal Electronic energy + Delta-G solvation = -17483.808313 eV Core-core repulsion = 14599.906848 eV Total energy + Delta-G solvation = -2883.901465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67731 -40.25190 -35.88125 -33.49818 -32.89171 -30.97635 -29.89633 -28.79081 -26.23893 -25.50120 -24.59231 -20.36136 -19.68384 -19.44374 -18.20226 -16.97541 -16.73599 -16.21573 -14.62697 -14.19342 -13.89374 -13.53812 -13.31867 -12.80425 -12.52068 -12.49069 -12.25755 -11.94561 -11.80165 -11.36939 -11.21864 -10.99207 -10.97383 -10.64580 -10.50037 -10.28576 -9.83052 -9.17522 -8.45676 -7.98059 -7.52961 -7.36422 -7.18349 -6.25520 -4.11486 2.71224 2.79523 3.21441 3.27402 3.27924 3.30487 3.72435 3.82151 4.23366 4.39570 4.71775 5.35685 5.45510 5.69859 5.76782 5.79218 6.01760 6.06698 6.24084 6.47025 6.52381 6.72824 6.88940 7.00403 7.05511 7.32164 7.50628 7.64802 7.71881 7.83227 8.14276 8.35855 8.75486 8.99360 9.29203 10.19865 10.72576 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.009247 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.560307 B = 3027.283905 C = 4732.731664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.009 4.009 3 C -0.171 4.171 4 C -0.128 4.128 5 C 0.043 3.957 6 C -0.214 4.214 7 C 0.040 3.960 8 Cl -0.069 7.069 9 N -0.432 5.432 10 H 0.420 0.580 11 N -0.314 5.314 12 C 0.208 3.792 13 C -0.437 4.437 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.783 5.783 17 Si 0.902 3.098 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.026 4.026 22 N -0.565 5.565 23 H 0.404 0.596 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -9.634 6.280 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C -0.196 4.196 4 C -0.135 4.135 5 C 0.004 3.996 6 C -0.229 4.229 7 C -0.112 4.112 8 Cl -0.042 7.042 9 N -0.141 5.141 10 H 0.259 0.741 11 N -0.148 5.148 12 C 0.060 3.940 13 C -0.476 4.476 14 H 0.099 0.901 15 C -0.146 4.146 16 N -0.412 5.412 17 Si 0.728 3.272 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.155 4.155 22 N -0.162 5.162 23 H 0.238 0.762 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.227 -9.311 5.041 10.820 hybrid contribution -0.279 -0.564 0.343 0.716 sum -2.505 -9.875 5.384 11.523 Atomic orbital electron populations 1.20203 0.88994 1.02256 1.02031 1.20216 0.92872 0.86666 1.12222 1.20688 0.92363 0.97578 1.08981 1.19520 0.94992 0.92466 1.06473 1.17969 0.92312 0.97377 0.91922 1.19725 1.05536 1.00076 0.97605 1.21786 1.05576 0.92091 0.91771 1.98260 1.78166 1.36451 1.91302 1.43680 1.39259 1.21076 1.10084 0.74051 1.74866 1.13627 1.03423 1.22920 1.18984 0.94959 0.92834 0.87208 1.18439 1.23937 1.05430 0.99807 0.90064 1.25743 0.95904 0.98363 0.94553 1.69947 1.36334 1.30437 1.04469 0.86489 0.81306 0.80860 0.78590 1.19364 1.20931 1.19340 1.21469 0.85504 0.95781 1.12768 1.41741 1.06206 1.07427 1.60790 0.76157 0.91698 0.92758 0.90546 0.84724 0.90951 0.92701 0.92127 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.42 36.01 0.38 -0.56 16 2 C -0.01 -0.14 7.16 -81.79 -0.59 -0.72 16 3 C -0.17 -3.25 10.71 -39.79 -0.43 -3.68 16 4 C -0.13 -2.45 5.37 -104.82 -0.56 -3.02 16 5 C 0.04 0.88 5.96 -29.03 -0.17 0.70 16 6 C -0.21 -5.06 5.50 -104.17 -0.57 -5.63 16 7 C 0.04 0.88 7.86 -16.80 -0.13 0.75 16 8 Cl -0.07 -1.19 29.04 -51.86 -1.51 -2.69 16 9 N -0.43 -9.95 6.87 32.88 0.23 -9.72 16 10 H 0.42 8.14 8.96 -190.44 -1.71 6.43 16 11 N -0.31 -8.65 10.49 32.33 0.34 -8.31 16 12 C 0.21 5.71 6.78 -84.73 -0.57 5.14 16 13 C -0.44 -11.98 9.22 -37.77 -0.35 -12.33 16 14 H 0.08 2.10 7.54 -52.49 -0.40 1.70 16 15 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 16 N -0.78 -22.16 11.97 55.54 0.66 -21.49 16 17 Si 0.90 19.89 29.56 -169.99 -5.02 14.86 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C -0.03 -0.43 11.85 -16.75 -0.20 -0.63 16 22 N -0.57 -8.20 6.08 -9.12 -0.06 -8.26 16 23 H 0.40 4.36 8.96 -40.82 -0.37 4.00 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.13 2.62 8.06 -52.48 -0.42 2.19 16 28 H 0.07 1.48 7.79 -51.93 -0.40 1.07 16 29 H 0.05 1.00 8.02 -51.93 -0.42 0.59 16 30 H 0.27 7.04 8.30 -40.82 -0.34 6.70 16 31 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -31.70 291.78 -8.79 -40.50 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.54 Total: 8.85 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.29 Total: -18.12 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 1.17 Total: -47.79 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.51 Total: -2.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.70 -8.79 -40.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.314 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds