Wall clock time and date at job start Mon Mar 30 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34845 * 125.88833 * 2 1 4 4 C 1.40883 * 107.41891 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.29413 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47206 * 270.00441 * 5 4 3 7 7 C 1.35218 * 127.23414 * 269.68470 * 6 5 4 8 8 Cl 1.73602 * 126.32575 * 0.02562 * 7 6 5 9 9 N 1.35945 * 107.34830 * 179.84757 * 7 6 5 10 10 H 0.96996 * 124.87058 * 180.14536 * 9 7 6 11 11 N 1.28475 * 110.27032 * 0.43592 * 9 7 6 12 12 C 1.32765 * 109.96576 * 359.72890 * 11 9 7 13 13 C 1.41423 * 126.56025 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99696 * 180.02562 * 13 12 11 15 15 C 1.39847 * 119.99722 * 359.97438 * 13 12 11 16 16 N 1.30898 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99913 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46833 * 60.00379 * 17 15 13 19 19 H 1.48490 * 109.47351 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47049 * 300.00599 * 17 15 13 21 21 C 1.34854 * 107.41814 * 0.02562 * 4 3 2 22 22 N 1.36343 * 108.21624 * 0.26031 * 21 4 3 23 23 H 0.96994 * 125.63652 * 179.73195 * 22 21 4 24 24 H 1.09005 * 109.46816 * 89.99921 * 1 2 3 25 25 H 1.09006 * 109.47039 * 209.99215 * 1 2 3 26 26 H 1.08995 * 109.47256 * 329.99496 * 1 2 3 27 27 H 1.08010 * 126.29114 * 0.04613 * 3 2 1 28 28 H 1.08994 * 109.47152 * 30.00060 * 5 4 3 29 29 H 1.08999 * 109.47294 * 150.00655 * 5 4 3 30 30 H 0.97002 * 119.99992 * 179.97438 * 16 15 13 31 31 H 1.08002 * 125.89007 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0006 5 6 4.8647 1.5156 -0.0003 6 6 5.2746 1.8065 -1.4210 7 6 6.1229 1.0884 -2.1912 8 17 6.9564 -0.3617 -1.7264 9 7 6.1992 1.7096 -3.3980 10 1 6.7379 1.4055 -4.1451 11 7 5.4604 2.7606 -3.4052 12 6 4.8554 2.8974 -2.2313 13 6 3.9641 3.9301 -1.8583 14 1 3.5306 3.9382 -0.8692 15 6 3.6449 4.9415 -2.7699 16 7 4.1707 4.9320 -3.9686 17 14 2.4671 6.3052 -2.2775 18 1 3.0179 7.0368 -1.1084 19 1 2.2952 7.2452 -3.4141 20 1 1.1515 5.7174 -1.9186 21 6 3.6090 -0.7022 -0.0015 22 7 2.3063 -1.1045 -0.0074 23 1 1.9990 -2.0245 -0.0130 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.9670 2.1207 0.0007 28 1 4.6481 2.4518 0.5142 29 1 5.6751 0.9980 0.5129 30 1 3.9491 5.6333 -4.6011 31 1 4.4722 -1.3513 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:56 Heat of formation + Delta-G solvation = 75.900456 kcal Electronic energy + Delta-G solvation = -17484.672032 eV Core-core repulsion = 14599.906848 eV Total energy + Delta-G solvation = -2884.765184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.36285 -41.72606 -37.47207 -35.38537 -34.55590 -32.14440 -31.60877 -30.53961 -27.85148 -27.36071 -25.95628 -22.29708 -21.12394 -20.95079 -19.76495 -18.73000 -18.21422 -17.98314 -16.48887 -15.79402 -15.31818 -15.26436 -14.66650 -14.47475 -14.00945 -13.83511 -13.54967 -13.21874 -13.10311 -12.91656 -12.86960 -12.65091 -12.62748 -12.37538 -12.16867 -11.87612 -11.64959 -11.11791 -10.36417 -9.51853 -9.34195 -9.03320 -8.60539 -8.25161 -6.17587 1.01094 1.45755 1.46226 1.46555 1.57788 1.59029 2.24531 2.38005 2.43741 2.67079 3.03193 3.67240 4.23349 4.40662 4.58593 4.61106 4.68609 4.79446 4.86328 5.06104 5.07254 5.18923 5.24874 5.46780 5.49629 5.52856 5.79450 5.87487 6.29930 6.43062 6.44686 6.87999 6.99217 7.03422 7.27594 8.25759 8.74540 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.009247 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.560307 B = 3027.283905 C = 4732.731664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.004 3.996 3 C -0.217 4.217 4 C -0.160 4.160 5 C 0.050 3.950 6 C -0.227 4.227 7 C 0.049 3.951 8 Cl -0.020 7.020 9 N -0.431 5.431 10 H 0.433 0.567 11 N -0.352 5.352 12 C 0.173 3.827 13 C -0.463 4.463 14 H 0.082 0.918 15 C 0.024 3.976 16 N -0.824 5.824 17 Si 0.976 3.024 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.261 1.261 21 C -0.018 4.018 22 N -0.549 5.549 23 H 0.425 0.575 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.271 0.729 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 -11.457 7.258 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C -0.242 4.242 4 C -0.166 4.166 5 C 0.011 3.989 6 C -0.241 4.241 7 C -0.104 4.104 8 Cl 0.007 6.993 9 N -0.142 5.142 10 H 0.275 0.725 11 N -0.187 5.187 12 C 0.024 3.976 13 C -0.502 4.502 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.454 5.454 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.149 4.149 22 N -0.147 5.147 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.973 -11.184 6.026 13.047 hybrid contribution 0.046 -0.180 0.067 0.198 sum -2.928 -11.364 6.093 13.223 Atomic orbital electron populations 1.20314 0.86177 1.04092 1.02789 1.20639 0.94559 0.86079 1.09581 1.20744 0.93387 0.97844 1.12178 1.19528 0.94523 0.93676 1.08907 1.17907 0.93652 0.97334 0.90005 1.20065 1.05689 0.99306 0.99020 1.21863 1.04642 0.93142 0.90735 1.98270 1.76956 1.33197 1.90848 1.43622 1.38982 1.20484 1.11152 0.72499 1.74735 1.14797 1.05337 1.23789 1.19422 0.95673 0.94310 0.88221 1.18751 1.24749 1.06439 1.00241 0.89968 1.26635 0.97435 1.00663 0.94278 1.70076 1.38095 1.31561 1.05658 0.85358 0.78964 0.77509 0.78412 1.18503 1.20315 1.18551 1.21654 0.86860 0.94998 1.11364 1.41730 1.05400 1.08336 1.59217 0.73630 0.91334 0.89649 0.90066 0.86743 0.92490 0.90867 0.91972 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.42 71.24 0.74 -0.91 16 2 C 0.00 0.13 7.16 41.08 0.29 0.42 16 3 C -0.22 -8.31 10.71 22.14 0.24 -8.07 16 4 C -0.16 -6.08 5.37 -19.99 -0.11 -6.18 16 5 C 0.05 2.04 5.96 29.10 0.17 2.21 16 6 C -0.23 -10.81 5.50 -19.57 -0.11 -10.92 16 7 C 0.05 2.11 7.86 83.36 0.65 2.76 16 8 Cl -0.02 -0.65 29.04 -2.72 -0.08 -0.73 16 9 N -0.43 -19.98 6.87 -49.89 -0.34 -20.32 16 10 H 0.43 16.74 8.96 -219.99 -1.97 14.77 16 11 N -0.35 -19.93 10.49 -51.62 -0.54 -20.47 16 12 C 0.17 9.79 6.78 40.77 0.28 10.06 16 13 C -0.46 -26.36 9.22 23.44 0.22 -26.14 16 14 H 0.08 4.46 7.54 -2.91 -0.02 4.44 16 15 C 0.02 1.31 5.49 85.22 0.47 1.78 16 16 N -0.82 -48.12 11.97 21.81 0.26 -47.86 16 17 Si 0.98 41.78 29.56 68.60 2.03 43.80 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 21 C -0.02 -0.57 11.85 83.21 0.99 0.42 16 22 N -0.55 -14.40 6.08 -182.76 -1.11 -15.51 16 23 H 0.42 7.55 8.96 -92.71 -0.83 6.72 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.06 2.43 7.79 -2.39 -0.02 2.41 16 29 H 0.07 2.61 8.02 -2.39 -0.02 2.59 16 30 H 0.27 14.63 8.30 -92.71 -0.77 13.86 16 31 H 0.17 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -70.50 291.78 2.43 -68.06 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.62 Total: 27.58 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.83 Total: -34.56 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -1.73 Total: -104.16 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -70.50 2.43 -68.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.964 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds