Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30443 * 125.45416 * 2 1 4 4 C 1.33984 * 108.95087 * 179.97438 * 3 2 1 5 5 C 1.36070 * 107.48545 * 0.02562 * 4 3 2 6 6 C 1.47159 * 126.61604 * 179.97438 * 5 4 3 7 7 N 1.32100 * 127.52441 * 179.97438 * 6 5 4 8 8 C 1.30915 * 116.75720 * 179.97438 * 7 6 5 9 9 C 1.50696 * 121.03756 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47384 * 89.99918 * 9 8 7 11 11 C 1.50702 * 109.47386 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99986 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99992 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00103 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.47311 * 90.00134 * 15 13 11 17 17 H 1.48508 * 109.46920 * 210.00190 * 15 13 11 18 18 H 1.48501 * 109.47203 * 329.99789 * 15 13 11 19 19 N 1.30335 * 117.93412 * 0.02562 * 8 7 6 20 20 S 1.69949 * 105.78727 * 359.76537 * 19 8 7 21 21 O 1.33926 * 125.45586 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47516 * 90.02122 * 1 2 3 23 23 H 1.09001 * 109.46448 * 210.02096 * 1 2 3 24 24 H 1.09005 * 109.46810 * 330.01568 * 1 2 3 25 25 H 1.08000 * 126.25509 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.47335 * 210.00677 * 9 8 7 27 27 H 1.09010 * 109.46799 * 330.00352 * 9 8 7 28 28 H 1.09004 * 109.47504 * 300.00655 * 10 9 8 29 29 H 1.08998 * 109.47136 * 60.00323 * 10 9 8 30 30 H 0.96996 * 120.00159 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0626 0.0000 4 6 3.5483 0.6820 0.0006 5 6 3.5716 -0.6785 0.0003 6 6 4.7676 -1.5359 0.0003 7 7 4.8112 -2.8562 0.0005 8 6 5.9990 -3.4067 -0.0001 9 6 6.1610 -4.9049 -0.0005 10 6 6.2151 -5.4117 -1.4430 11 6 6.3765 -6.9101 -1.4434 12 1 6.4350 -7.4471 -0.5082 13 6 6.4504 -7.5952 -2.6376 14 7 6.5917 -8.9028 -2.6379 15 14 6.3499 -6.6663 -4.2551 16 1 7.7151 -6.2697 -4.6839 17 1 5.7399 -7.5393 -5.2902 18 1 5.5144 -5.4515 -4.0772 19 7 7.0372 -2.6187 -0.0005 20 16 6.4167 -1.0365 -0.0066 21 8 2.2839 -1.0909 0.0005 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3632 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5136 25 1 4.4081 1.3355 0.0003 26 1 7.0851 -5.1706 0.5130 27 1 5.3153 -5.3619 0.5136 28 1 5.2910 -5.1460 -1.9565 29 1 7.0607 -4.9548 -1.9572 30 1 6.6441 -9.3847 -3.4780 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = 72.176161 kcal Electronic energy + Delta-G solvation = -16556.604407 eV Core-core repulsion = 13673.721433 eV Total energy + Delta-G solvation = -2882.882975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.69068 -40.25283 -35.22787 -34.34164 -33.22991 -31.97824 -31.09912 -28.86339 -26.67806 -24.48686 -22.83034 -21.92389 -20.94164 -19.43762 -18.85722 -17.53551 -17.21596 -16.85818 -16.10057 -15.23403 -14.37264 -14.25314 -13.98534 -13.59537 -13.51483 -13.26316 -12.94786 -12.68159 -12.10403 -11.79428 -11.74444 -11.61628 -11.11098 -11.03178 -10.90779 -10.32939 -10.06213 -9.86896 -9.83797 -9.42253 -9.29713 -8.63763 -8.58135 -6.08997 -4.08177 -0.22841 0.74590 1.31563 1.61453 2.20218 2.34163 2.76368 3.28957 3.36059 3.38615 3.40654 3.70997 4.41855 4.46940 4.57324 4.94472 4.97333 5.03943 5.25074 5.32070 5.39154 5.54109 5.72032 5.83644 6.10719 6.21421 6.60867 7.12764 7.20478 7.24755 7.61032 7.68785 8.45207 8.93967 9.52437 11.03975 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.004639 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.834237 B = 6033.821860 C = 6670.985506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.216 3.784 3 N -0.483 5.483 4 C 0.024 3.976 5 C 0.016 3.984 6 C 0.134 3.866 7 N -0.485 5.485 8 C 0.291 3.709 9 C -0.023 4.023 10 C -0.003 4.003 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.267 1.267 19 N -0.461 5.461 20 S 0.256 5.744 21 O -0.173 6.173 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.196 0.804 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.022 0.978 29 H 0.016 0.984 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 21.216 5.965 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.009 3.991 3 N -0.213 5.213 4 C -0.123 4.123 5 C -0.041 4.041 6 C -0.150 4.150 7 N -0.207 5.207 8 C 0.003 3.997 9 C -0.066 4.066 10 C -0.042 4.042 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.192 1.192 19 N -0.291 5.291 20 S 0.397 5.603 21 O -0.059 6.059 22 H 0.117 0.883 23 H 0.113 0.887 24 H 0.124 0.876 25 H 0.213 0.787 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.188 21.888 5.854 24.092 hybrid contribution -0.412 -0.930 -0.998 1.425 sum -8.600 20.958 4.856 23.169 Atomic orbital electron populations 1.20401 0.80558 1.05647 1.05286 1.26618 0.96796 0.78316 0.97382 1.70446 1.01506 1.29855 1.19461 1.23485 0.95817 0.91100 1.01866 1.19622 0.80684 0.91752 1.12011 1.25026 0.97109 0.92288 1.00624 1.67783 1.26901 1.07273 1.18742 1.24251 0.81428 1.01441 0.92608 1.20541 1.03835 0.79807 1.02417 1.19558 0.97008 0.97630 0.90044 1.20984 1.50768 0.89329 0.94850 0.90497 1.24947 0.94344 0.94707 0.99024 1.69896 1.50144 1.06727 1.27008 0.86824 0.78785 0.80236 0.83775 1.20130 1.21129 1.19193 1.77800 1.26516 0.96724 1.28025 1.84600 0.94977 1.16047 1.64629 1.84590 1.15476 1.36998 1.68794 0.88274 0.88735 0.87617 0.78662 0.89192 0.88969 0.96020 0.96559 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.22 2.24 8.32 -12.87 -0.11 2.14 16 3 N -0.48 -5.43 11.26 -10.78 -0.12 -5.55 16 4 C 0.02 0.26 11.75 -17.39 -0.20 0.05 16 5 C 0.02 0.22 7.31 -36.74 -0.27 -0.05 16 6 C 0.13 2.05 7.64 -13.82 -0.11 1.95 16 7 N -0.48 -9.06 10.61 -11.92 -0.13 -9.18 16 8 C 0.29 5.60 6.81 -159.18 -1.08 4.52 16 9 C -0.02 -0.49 5.68 -27.89 -0.16 -0.64 16 10 C 0.00 -0.08 4.02 -27.89 -0.11 -0.20 16 11 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.89 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 15 Si 0.88 22.11 27.47 -169.99 -4.67 17.45 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 19 N -0.46 -8.35 12.16 29.66 0.36 -7.99 16 20 S 0.26 3.48 23.67 -107.50 -2.55 0.93 16 21 O -0.17 -2.34 10.80 4.13 0.04 -2.30 16 22 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.20 1.44 8.06 -52.49 -0.42 1.01 16 26 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 28 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 29 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -33.94 287.70 -6.93 -40.87 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: -2.89 Total: -6.27 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.09 Total: -5.38 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.89 Total: -49.63 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.45 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.55 Total: 0.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.94 -6.93 -40.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.045 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds