Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30443 * 125.45416 * 2 1 4 4 C 1.33984 * 108.95087 * 179.97438 * 3 2 1 5 5 C 1.36070 * 107.48545 * 0.02562 * 4 3 2 6 6 C 1.47159 * 126.61604 * 179.97438 * 5 4 3 7 7 N 1.32100 * 127.52441 * 179.97438 * 6 5 4 8 8 C 1.30915 * 116.75720 * 179.97438 * 7 6 5 9 9 C 1.50696 * 121.03756 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47384 * 89.99918 * 9 8 7 11 11 C 1.50702 * 109.47386 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99986 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99992 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00103 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.47311 * 90.00134 * 15 13 11 17 17 H 1.48508 * 109.46920 * 210.00190 * 15 13 11 18 18 H 1.48501 * 109.47203 * 329.99789 * 15 13 11 19 19 N 1.30335 * 117.93412 * 0.02562 * 8 7 6 20 20 S 1.69949 * 105.78727 * 359.76537 * 19 8 7 21 21 O 1.33926 * 125.45586 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47516 * 90.02122 * 1 2 3 23 23 H 1.09001 * 109.46448 * 210.02096 * 1 2 3 24 24 H 1.09005 * 109.46810 * 330.01568 * 1 2 3 25 25 H 1.08000 * 126.25509 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.47335 * 210.00677 * 9 8 7 27 27 H 1.09010 * 109.46799 * 330.00352 * 9 8 7 28 28 H 1.09004 * 109.47504 * 300.00655 * 10 9 8 29 29 H 1.08998 * 109.47136 * 60.00323 * 10 9 8 30 30 H 0.96996 * 120.00159 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0626 0.0000 4 6 3.5483 0.6820 0.0006 5 6 3.5716 -0.6785 0.0003 6 6 4.7676 -1.5359 0.0003 7 7 4.8112 -2.8562 0.0005 8 6 5.9990 -3.4067 -0.0001 9 6 6.1610 -4.9049 -0.0005 10 6 6.2151 -5.4117 -1.4430 11 6 6.3765 -6.9101 -1.4434 12 1 6.4350 -7.4471 -0.5082 13 6 6.4504 -7.5952 -2.6376 14 7 6.5917 -8.9028 -2.6379 15 14 6.3499 -6.6663 -4.2551 16 1 7.7151 -6.2697 -4.6839 17 1 5.7399 -7.5393 -5.2902 18 1 5.5144 -5.4515 -4.0772 19 7 7.0372 -2.6187 -0.0005 20 16 6.4167 -1.0365 -0.0066 21 8 2.2839 -1.0909 0.0005 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3632 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5136 25 1 4.4081 1.3355 0.0003 26 1 7.0851 -5.1706 0.5130 27 1 5.3153 -5.3619 0.5136 28 1 5.2910 -5.1460 -1.9565 29 1 7.0607 -4.9548 -1.9572 30 1 6.6441 -9.3847 -3.4780 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = 46.777749 kcal Electronic energy + Delta-G solvation = -16557.705765 eV Core-core repulsion = 13673.721433 eV Total energy + Delta-G solvation = -2883.984333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.56296 -41.55726 -36.12199 -36.03553 -34.70063 -33.33421 -32.57608 -29.77616 -28.41435 -25.70127 -23.80721 -23.33087 -22.29860 -20.82900 -20.03505 -19.00860 -18.54226 -18.11237 -17.02715 -16.71856 -16.12515 -15.48364 -15.15770 -15.02788 -14.74854 -14.41784 -13.98093 -13.63970 -13.40277 -13.31792 -13.04850 -12.94690 -12.60174 -12.34133 -12.03381 -11.96636 -11.87992 -11.80060 -11.49039 -11.10087 -10.82168 -10.61719 -9.62878 -8.34367 -6.38927 -1.33013 -0.36704 0.30158 0.37099 1.23979 1.30155 1.31601 1.43022 1.47940 1.58246 2.30440 2.34362 2.93932 3.00282 3.47575 3.65534 4.02789 4.19709 4.33250 4.35513 4.44627 4.56098 4.63079 4.72981 4.83835 4.87814 5.19920 5.20514 5.30856 5.53704 6.19683 6.29143 6.41793 6.66933 7.25344 8.81883 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.004639 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.834237 B = 6033.821860 C = 6670.985506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.229 3.771 3 N -0.503 5.503 4 C 0.056 3.944 5 C -0.028 4.028 6 C 0.133 3.867 7 N -0.528 5.528 8 C 0.282 3.718 9 C -0.016 4.016 10 C 0.006 3.994 11 C -0.531 4.531 12 H 0.046 0.954 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.942 3.058 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.260 1.260 19 N -0.500 5.500 20 S 0.346 5.654 21 O -0.199 6.199 22 H 0.117 0.883 23 H 0.106 0.894 24 H 0.126 0.874 25 H 0.229 0.771 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 24.541 5.324 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.023 3.977 3 N -0.232 5.232 4 C -0.091 4.091 5 C -0.084 4.084 6 C -0.149 4.149 7 N -0.252 5.252 8 C -0.006 4.006 9 C -0.058 4.058 10 C -0.033 4.033 11 C -0.569 4.569 12 H 0.064 0.936 13 C -0.183 4.183 14 N -0.583 5.583 15 Si 0.766 3.234 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.184 1.184 19 N -0.332 5.332 20 S 0.490 5.510 21 O -0.086 6.086 22 H 0.136 0.864 23 H 0.124 0.876 24 H 0.144 0.856 25 H 0.246 0.754 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.103 25.241 5.226 27.336 hybrid contribution -0.253 -1.766 -0.703 1.917 sum -9.356 23.475 4.523 25.672 Atomic orbital electron populations 1.20769 0.77282 1.07223 1.06855 1.27750 0.98352 0.77445 0.94127 1.70562 1.01727 1.30054 1.20881 1.24058 0.96748 0.90316 0.98001 1.19675 0.80413 0.92311 1.15994 1.25370 0.98952 0.91639 0.98925 1.67734 1.26951 1.09150 1.21324 1.23679 0.82118 1.00582 0.94261 1.20195 1.03867 0.81909 0.99864 1.19361 0.96315 0.94941 0.92667 1.21289 1.50258 0.91529 0.93859 0.93563 1.25836 0.93995 0.95538 1.02958 1.70026 1.51524 1.08449 1.28272 0.85778 0.79394 0.79080 0.79138 1.18935 1.20150 1.18449 1.77518 1.27538 0.99498 1.28606 1.84125 0.92432 1.11920 1.62554 1.84590 1.15948 1.38496 1.69584 0.86446 0.87555 0.85568 0.75413 0.89038 0.89295 0.96727 0.96575 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.23 4.24 8.32 88.31 0.74 4.97 16 3 N -0.50 -9.87 11.26 -302.75 -3.41 -13.28 16 4 C 0.06 1.04 11.75 83.86 0.99 2.03 16 5 C -0.03 -0.70 7.31 24.11 0.18 -0.52 16 6 C 0.13 3.91 7.64 87.00 0.66 4.58 16 7 N -0.53 -19.72 10.61 -191.63 -2.03 -21.75 16 8 C 0.28 10.92 6.81 139.44 0.95 11.87 16 9 C -0.02 -0.68 5.68 29.84 0.17 -0.51 16 10 C 0.01 0.31 4.02 29.85 0.12 0.43 16 11 C -0.53 -31.24 9.66 25.60 0.25 -30.99 16 12 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 13 C 0.01 0.87 5.47 84.65 0.46 1.34 16 14 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 15 Si 0.94 45.71 27.47 68.60 1.88 47.59 16 16 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 19 N -0.50 -17.72 12.16 -60.07 -0.73 -18.45 16 20 S 0.35 8.64 23.67 -56.49 -1.34 7.30 16 21 O -0.20 -5.15 10.80 -8.13 -0.09 -5.23 16 22 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.23 2.39 8.06 -2.91 -0.02 2.37 16 26 H 0.09 3.77 8.14 -2.38 -0.02 3.75 16 27 H 0.09 3.74 8.14 -2.38 -0.02 3.72 16 28 H 0.01 0.74 7.20 -2.38 -0.02 0.72 16 29 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -74.96 287.70 0.96 -74.00 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: 1.12 Total: -4.56 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.26 Total: -6.57 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.87 Total: -112.53 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.09 Total: -5.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Atomic # 16 Polarization: 8.64 SS G_CDS: -1.34 Total: 7.30 kcal Total: -74.96 0.96 -74.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.781 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds