Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29186 * 124.82301 * 2 1 4 4 C 1.31351 * 117.29400 * 179.73902 * 3 2 1 5 5 C 1.35096 * 114.23704 * 0.47747 * 4 3 2 6 6 C 1.47785 * 126.10104 * 179.82984 * 5 4 3 7 7 N 1.31006 * 126.44713 * 359.68916 * 6 5 4 8 8 O 1.21293 * 110.05054 * 180.02562 * 7 6 5 9 9 C 1.33681 * 110.07237 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.40238 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47120 * 270.02135 * 10 9 8 12 12 C 1.50697 * 109.47118 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00311 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99781 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00042 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99678 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47480 * 59.99796 * 16 14 12 18 18 H 1.48497 * 109.47142 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47166 * 299.99788 * 16 14 12 20 20 N 1.30930 * 107.18983 * 359.97438 * 9 8 7 21 21 S 1.70960 * 124.82043 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46994 * 269.99634 * 1 2 3 23 23 H 1.08997 * 109.47278 * 29.99536 * 1 2 3 24 24 H 1.08998 * 109.47267 * 149.99872 * 1 2 3 25 25 H 1.07994 * 122.87775 * 180.32578 * 4 3 2 26 26 H 1.08998 * 109.47481 * 30.02435 * 10 9 8 27 27 H 1.09005 * 109.46744 * 150.02167 * 10 9 8 28 28 H 1.08998 * 109.47189 * 300.00479 * 11 10 9 29 29 H 1.09006 * 109.47086 * 59.99851 * 11 10 9 30 30 H 0.97004 * 119.99854 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2447 1.0605 0.0000 4 6 3.5469 0.8884 0.0053 5 6 3.9353 -0.4055 -0.0001 6 6 5.3293 -0.8962 0.0003 7 7 6.4134 -0.1606 0.0003 8 8 7.3973 -0.8699 0.0001 9 6 7.0352 -2.1567 -0.0005 10 6 7.9606 -3.3462 -0.0013 11 6 8.2738 -3.7476 -1.4441 12 6 9.1986 -4.9374 -1.4450 13 1 9.5296 -5.3649 -0.5100 14 6 9.6223 -5.4803 -2.6395 15 7 9.2198 -4.9596 -3.7780 16 14 10.7681 -6.9556 -2.6405 17 1 10.1138 -8.0912 -1.9424 18 1 11.0733 -7.3444 -4.0408 19 1 12.0289 -6.6037 -1.9392 20 7 5.7263 -2.1904 -0.0002 21 16 2.4832 -1.4035 -0.0006 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5138 25 1 4.2469 1.7107 0.0110 26 1 8.8861 -3.0870 0.5128 27 1 7.4811 -4.1798 0.5119 28 1 7.3483 -4.0068 -1.9582 29 1 8.7532 -2.9139 -1.9573 30 1 9.5182 -5.3413 -4.6183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260007348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = 96.797207 kcal Electronic energy + Delta-G solvation = -16436.589903 eV Core-core repulsion = 13554.774577 eV Total energy + Delta-G solvation = -2881.815326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.22326 -39.88330 -35.81157 -34.65824 -32.94565 -32.04576 -30.33372 -28.61013 -25.92511 -24.68244 -23.58348 -22.64359 -21.19643 -19.33160 -18.36091 -17.80159 -16.96685 -16.35737 -15.73278 -15.18181 -14.58416 -14.44639 -14.11260 -13.65685 -13.32125 -13.08580 -12.62822 -12.50570 -12.19516 -11.81656 -11.67958 -11.51320 -11.01363 -10.90387 -10.78015 -10.31553 -10.18557 -9.89539 -9.62170 -9.36772 -9.28256 -8.75217 -8.48203 -6.12581 -4.17815 0.12950 0.97781 1.50891 1.53069 2.30521 2.90975 3.17597 3.28145 3.33284 3.35054 3.57639 3.94657 4.27904 4.37930 4.75318 5.09660 5.12344 5.18977 5.24023 5.34252 5.53573 5.81523 5.92499 5.94182 6.14849 6.24376 6.54588 7.43930 7.44683 7.50440 7.82161 8.17118 8.37280 8.87109 9.47353 10.98578 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037169 B = 0.003653 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.137840 B = 7664.088622 C = 8071.221353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.031 3.969 3 N -0.475 5.475 4 C 0.082 3.918 5 C -0.164 4.164 6 C 0.233 3.767 7 N -0.378 5.378 8 O 0.079 5.921 9 C 0.225 3.775 10 C -0.030 4.030 11 C 0.028 3.972 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.490 5.490 21 S 0.216 5.784 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.183 0.817 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 7.735 8.397 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.245 4.245 3 N -0.189 5.189 4 C -0.076 4.076 5 C -0.287 4.287 6 C -0.038 4.038 7 N -0.088 5.088 8 O 0.019 5.981 9 C 0.006 3.994 10 C -0.069 4.069 11 C -0.011 4.011 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.223 5.223 21 S 0.471 5.529 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.200 0.800 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.031 7.802 8.199 18.815 hybrid contribution 1.488 -0.092 -0.211 1.506 sum -13.543 7.710 7.988 17.512 Atomic orbital electron populations 1.20470 0.84751 1.04480 1.04068 1.27394 1.02301 0.91975 1.02799 1.66267 1.04305 1.31593 1.16772 1.22004 0.91128 0.95076 0.99346 1.22771 0.93001 0.96625 1.16345 1.22375 0.92550 0.86171 1.02685 1.74934 0.93922 1.18225 1.21716 1.85279 1.30029 1.17077 1.65726 1.29600 0.91054 0.87625 0.91104 1.20842 0.94465 0.86997 1.04573 1.19169 0.97808 0.97255 0.86829 1.21015 1.28974 1.13811 0.92791 0.92020 1.25012 0.96362 0.97334 0.95490 1.69953 1.44434 1.41061 0.97455 0.86556 0.81098 0.82679 0.77095 1.20059 1.21244 1.20053 1.72119 1.09389 1.18292 1.22517 1.84193 0.94207 1.09100 1.65381 0.89340 0.89075 0.89811 0.80025 0.88759 0.87971 0.95498 0.95705 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.03 0.34 7.38 -13.39 -0.10 0.24 16 3 N -0.47 -6.28 10.52 -11.59 -0.12 -6.41 16 4 C 0.08 1.15 11.28 -18.87 -0.21 0.94 16 5 C -0.16 -2.53 6.52 -36.80 -0.24 -2.77 16 6 C 0.23 4.21 8.05 -156.06 -1.26 2.95 16 7 N -0.38 -6.93 12.18 30.98 0.38 -6.55 16 8 O 0.08 1.45 11.29 18.01 0.20 1.65 16 9 C 0.23 4.21 7.75 -12.98 -0.10 4.11 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.03 0.67 4.95 -27.89 -0.14 0.53 16 12 C -0.53 -13.86 9.11 -34.44 -0.31 -14.18 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 16 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 N -0.49 -9.39 11.58 -9.89 -0.11 -9.50 16 21 S 0.22 2.66 23.17 -107.50 -2.49 0.17 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 290.74 15.07 4.38 4.38 Total: -1.00 -30.69 290.74 -7.22 -37.91 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -2.92 Total: -4.69 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.24 Total: -7.47 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.88 Total: -47.58 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.20 Total: 1.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.49 Total: 0.17 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.69 -7.22 -37.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.705 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds