Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29186 * 124.82301 * 2 1 4 4 C 1.31351 * 117.29400 * 179.73902 * 3 2 1 5 5 C 1.35096 * 114.23704 * 0.47747 * 4 3 2 6 6 C 1.47785 * 126.10104 * 179.82984 * 5 4 3 7 7 N 1.31006 * 126.44713 * 359.68916 * 6 5 4 8 8 O 1.21293 * 110.05054 * 180.02562 * 7 6 5 9 9 C 1.33681 * 110.07237 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.40238 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47120 * 270.02135 * 10 9 8 12 12 C 1.50697 * 109.47118 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00311 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99781 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00042 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99678 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47480 * 59.99796 * 16 14 12 18 18 H 1.48497 * 109.47142 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47166 * 299.99788 * 16 14 12 20 20 N 1.30930 * 107.18983 * 359.97438 * 9 8 7 21 21 S 1.70960 * 124.82043 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46994 * 269.99634 * 1 2 3 23 23 H 1.08997 * 109.47278 * 29.99536 * 1 2 3 24 24 H 1.08998 * 109.47267 * 149.99872 * 1 2 3 25 25 H 1.07994 * 122.87775 * 180.32578 * 4 3 2 26 26 H 1.08998 * 109.47481 * 30.02435 * 10 9 8 27 27 H 1.09005 * 109.46744 * 150.02167 * 10 9 8 28 28 H 1.08998 * 109.47189 * 300.00479 * 11 10 9 29 29 H 1.09006 * 109.47086 * 59.99851 * 11 10 9 30 30 H 0.97004 * 119.99854 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2447 1.0605 0.0000 4 6 3.5469 0.8884 0.0053 5 6 3.9353 -0.4055 -0.0001 6 6 5.3293 -0.8962 0.0003 7 7 6.4134 -0.1606 0.0003 8 8 7.3973 -0.8699 0.0001 9 6 7.0352 -2.1567 -0.0005 10 6 7.9606 -3.3462 -0.0013 11 6 8.2738 -3.7476 -1.4441 12 6 9.1986 -4.9374 -1.4450 13 1 9.5296 -5.3649 -0.5100 14 6 9.6223 -5.4803 -2.6395 15 7 9.2198 -4.9596 -3.7780 16 14 10.7681 -6.9556 -2.6405 17 1 10.1138 -8.0912 -1.9424 18 1 11.0733 -7.3444 -4.0408 19 1 12.0289 -6.6037 -1.9392 20 7 5.7263 -2.1904 -0.0002 21 16 2.4832 -1.4035 -0.0006 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5138 25 1 4.2469 1.7107 0.0110 26 1 8.8861 -3.0870 0.5128 27 1 7.4811 -4.1798 0.5119 28 1 7.3483 -4.0068 -1.9582 29 1 8.7532 -2.9139 -1.9573 30 1 9.5182 -5.3413 -4.6183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260007348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = 76.208091 kcal Electronic energy + Delta-G solvation = -16437.482714 eV Core-core repulsion = 13554.774577 eV Total energy + Delta-G solvation = -2882.708137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.64548 -40.89363 -37.25272 -36.31625 -34.59350 -33.19389 -31.91496 -29.64345 -27.76937 -25.70543 -25.00588 -24.13602 -22.77911 -20.51263 -19.42777 -19.26210 -18.58505 -18.03846 -16.92164 -16.50029 -16.09633 -15.72910 -15.45269 -14.95938 -14.49812 -14.33067 -13.84390 -13.75664 -13.44926 -13.17394 -12.99281 -12.80788 -12.74769 -12.62681 -12.26246 -12.01430 -11.94069 -11.37958 -11.18378 -10.87070 -10.55395 -10.37182 -9.86021 -8.19881 -6.32016 -0.93739 -0.01932 0.11480 0.51857 1.06446 1.47030 1.49681 1.57156 1.72445 1.73976 2.30446 2.45276 2.92640 3.06517 3.15747 3.84409 3.93396 4.14979 4.37184 4.47970 4.51521 4.58736 4.67306 4.75292 4.87548 4.92939 5.14772 5.43393 5.52148 5.77659 6.12921 6.44920 6.83634 6.94393 7.38315 8.92329 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037169 B = 0.003653 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.137840 B = 7664.088622 C = 8071.221353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.056 3.944 3 N -0.498 5.498 4 C 0.097 3.903 5 C -0.212 4.212 6 C 0.237 3.763 7 N -0.390 5.390 8 O 0.073 5.927 9 C 0.222 3.778 10 C -0.014 4.014 11 C 0.033 3.967 12 C -0.539 4.539 13 H 0.080 0.920 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.290 1.290 19 H -0.263 1.263 20 N -0.505 5.505 21 S 0.226 5.774 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.187 0.813 26 H 0.121 0.879 27 H 0.118 0.882 28 H -0.007 1.007 29 H -0.002 1.002 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 7.227 9.619 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.219 4.219 3 N -0.213 5.213 4 C -0.062 4.062 5 C -0.335 4.335 6 C -0.034 4.034 7 N -0.101 5.101 8 O 0.016 5.984 9 C 0.002 3.998 10 C -0.053 4.053 11 C -0.005 4.005 12 C -0.577 4.577 13 H 0.098 0.902 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.216 1.216 19 H -0.187 1.187 20 N -0.239 5.239 21 S 0.482 5.518 22 H 0.130 0.870 23 H 0.119 0.881 24 H 0.125 0.875 25 H 0.204 0.796 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.089 7.284 9.446 20.029 hybrid contribution 1.627 0.153 -0.591 1.738 sum -14.462 7.437 8.855 18.517 Atomic orbital electron populations 1.20789 0.81305 1.06079 1.05957 1.28254 1.03986 0.90800 0.98882 1.66385 1.03922 1.32290 1.18665 1.22164 0.91802 0.94820 0.97438 1.22879 0.92741 0.97934 1.19971 1.22767 0.93622 0.85654 1.01329 1.74901 0.94075 1.18295 1.22867 1.85256 1.30252 1.16927 1.65980 1.29533 0.91094 0.87810 0.91319 1.20619 0.95970 0.87576 1.01156 1.18958 0.95705 0.96013 0.89859 1.21537 1.28596 1.14045 0.93487 0.90190 1.26003 0.98156 1.00498 0.95162 1.70110 1.46265 1.42984 0.98178 0.85425 0.79207 0.79013 0.76961 1.18889 1.21613 1.18744 1.72103 1.09645 1.19183 1.22944 1.84105 0.92988 1.09353 1.65333 0.87045 0.88068 0.87536 0.79608 0.86078 0.86439 0.98812 0.98316 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.46 71.24 0.75 -0.05 16 2 C 0.06 1.11 7.38 88.50 0.65 1.77 16 3 N -0.50 -12.42 10.52 -190.59 -2.01 -14.42 16 4 C 0.10 2.66 11.28 84.04 0.95 3.61 16 5 C -0.21 -6.50 6.52 24.07 0.16 -6.34 16 6 C 0.24 8.65 8.05 136.99 1.10 9.75 16 7 N -0.39 -14.50 12.18 -58.84 -0.72 -15.21 16 8 O 0.07 2.73 11.29 74.49 0.84 3.57 16 9 C 0.22 8.35 7.75 88.36 0.68 9.04 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.03 1.63 4.95 29.85 0.15 1.78 16 12 C -0.54 -28.17 9.11 25.60 0.23 -27.94 16 13 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 14 C 0.00 0.00 5.46 84.66 0.46 0.46 16 15 N -0.94 -55.55 13.29 21.45 0.28 -55.26 16 16 Si 0.97 42.04 29.54 68.60 2.03 44.06 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 N -0.50 -19.53 11.58 -302.32 -3.50 -23.03 16 21 S 0.23 5.31 23.17 -56.49 -1.31 4.00 16 22 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.19 4.74 8.06 -2.91 -0.02 4.71 16 26 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.12 3.97 8.14 -2.38 -0.02 3.95 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 30 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -66.98 290.74 2.10 -64.88 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.17 Total: -0.29 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.31 Total: -8.30 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -5.94 Total: -107.93 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.84 Total: 3.57 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.31 Total: 4.00 kcal Total: -66.98 2.10 -64.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.092 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds