Wall clock time and date at job start Mon Mar 30 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37475 * 123.35460 * 2 1 4 4 C 1.33814 * 115.10476 * 180.02562 * 3 2 1 5 5 S 1.70621 * 110.95312 * 0.02562 * 4 3 2 6 6 C 1.36646 * 123.35253 * 180.02562 * 2 1 3 7 7 C 1.46589 * 125.45578 * 359.97438 * 6 2 1 8 8 O 1.21703 * 119.99955 * 353.43335 * 7 6 2 9 9 N 1.34776 * 119.99945 * 173.42330 * 7 6 2 10 10 C 1.47024 * 125.65037 * 5.06413 * 9 7 6 11 11 C 1.54317 * 107.27267 * 181.02163 * 10 9 7 12 12 C 1.55154 * 102.94346 * 22.18918 * 11 10 9 13 13 C 1.47428 * 125.64889 * 184.75211 * 9 7 6 14 14 H 1.09000 * 110.36205 * 274.74825 * 13 9 7 15 15 C 1.50700 * 110.36432 * 37.07346 * 13 9 7 16 16 H 1.07996 * 120.00233 * 25.31353 * 15 13 9 17 17 C 1.37879 * 119.99685 * 205.31239 * 15 13 9 18 18 N 1.31515 * 119.99769 * 184.89011 * 17 15 13 19 19 Si 1.86803 * 120.00013 * 4.88672 * 17 15 13 20 20 H 1.48498 * 109.46896 * 94.64757 * 19 17 15 21 21 H 1.48501 * 109.46988 * 214.64510 * 19 17 15 22 22 H 1.48495 * 109.47113 * 334.64527 * 19 17 15 23 23 H 1.08995 * 109.46978 * 273.01713 * 1 2 3 24 24 H 1.09000 * 109.47127 * 33.01338 * 1 2 3 25 25 H 1.08999 * 109.47195 * 153.01373 * 1 2 3 26 26 H 1.07999 * 122.44420 * 0.04267 * 3 2 1 27 27 H 1.07990 * 124.52583 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.87720 * 300.44139 * 10 9 7 29 29 H 1.09001 * 109.88166 * 61.59669 * 10 9 7 30 30 H 1.09005 * 110.71968 * 140.55916 * 11 10 9 31 31 H 1.09009 * 110.71951 * 263.65172 * 11 10 9 32 32 H 1.09002 * 111.00150 * 82.57362 * 12 11 10 33 33 H 1.09000 * 111.00506 * 206.38556 * 12 11 10 34 34 H 0.97003 * 119.99971 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9563 -0.0005 5 16 3.9624 -0.7081 -0.0018 6 6 2.2583 -1.1414 -0.0005 7 6 1.7284 -2.5082 -0.0006 8 8 0.5322 -2.6971 0.1204 9 7 2.5658 -3.5556 -0.1348 10 6 4.0333 -3.4787 -0.1837 11 6 4.5615 -4.9166 -0.3705 12 6 3.3437 -5.6573 -0.9833 13 6 2.1625 -4.9689 -0.2504 14 1 2.0207 -5.4049 0.7385 15 6 0.8996 -5.0890 -1.0639 16 1 0.6490 -4.3275 -1.7875 17 6 0.0643 -6.1711 -0.8844 18 7 -0.9865 -6.3263 -1.6599 19 14 0.4252 -7.4168 0.4600 20 1 -0.3415 -7.0628 1.6815 21 1 0.0259 -8.7712 0.0001 22 1 1.8780 -7.4066 0.7672 23 1 -0.3633 0.0541 1.0262 24 1 -0.3633 0.8617 -0.5599 25 1 -0.3633 -0.9158 -0.4663 26 1 1.8201 2.1334 0.0007 27 1 4.3206 1.7490 -0.0002 28 1 4.3440 -2.8575 -1.0238 29 1 4.4139 -3.0620 0.7488 30 1 5.4073 -4.9304 -1.0579 31 1 4.8389 -5.3532 0.5890 32 1 3.2884 -5.4942 -2.0596 33 1 3.3776 -6.7221 -0.7529 34 1 -1.5745 -7.0875 -1.5334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:07 Heat of formation + Delta-G solvation = 3.604263 kcal Electronic energy + Delta-G solvation = -18239.657708 eV Core-core repulsion = 15457.341576 eV Total energy + Delta-G solvation = -2782.316132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37143 -37.94647 -36.18278 -32.60677 -31.12210 -30.55466 -29.19408 -27.51493 -24.57883 -23.41857 -22.31112 -20.85832 -19.36714 -17.85778 -17.53235 -16.99271 -15.53525 -15.25237 -15.00397 -14.38848 -14.04858 -13.62454 -13.06927 -13.05356 -12.84536 -12.52387 -12.39953 -12.08815 -11.83480 -11.73886 -11.52002 -11.37150 -11.07143 -10.82639 -10.59488 -10.16997 -10.06474 -9.84093 -9.34642 -8.88299 -8.54539 -8.47765 -8.24599 -7.60089 -6.01605 -3.97661 0.83767 1.75440 2.14596 2.66442 3.29073 3.35918 3.39216 3.76538 3.96589 4.43863 5.00653 5.04884 5.09692 5.32656 5.37746 5.44886 5.53645 5.58569 5.75552 5.92795 6.02390 6.04884 6.11770 6.15743 6.28213 6.40665 6.57177 6.63650 6.69192 6.86873 7.15702 7.29857 7.57881 8.42179 8.56334 9.06883 9.08829 9.59183 11.12044 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.007343 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.192266 B = 3812.279043 C = 4658.517590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.040 4.040 3 C -0.143 4.143 4 C -0.261 4.261 5 S 0.192 5.808 6 C -0.246 4.246 7 C 0.592 3.408 8 O -0.491 6.491 9 N -0.605 5.605 10 C 0.089 3.911 11 C -0.131 4.131 12 C -0.129 4.129 13 C 0.236 3.764 14 H 0.036 0.964 15 C -0.494 4.494 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.870 3.130 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.160 0.840 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 10.642 3.783 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.055 4.055 3 C -0.175 4.175 4 C -0.398 4.398 5 S 0.460 5.540 6 C -0.366 4.366 7 C 0.378 3.622 8 O -0.366 6.366 9 N -0.340 5.340 10 C -0.036 4.036 11 C -0.169 4.169 12 C -0.168 4.168 13 C 0.135 3.865 14 H 0.054 0.946 15 C -0.533 4.533 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.697 3.303 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.188 1.188 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.021 9.678 3.816 16.666 hybrid contribution -0.980 0.454 0.703 1.289 sum 12.041 10.133 4.519 16.373 Atomic orbital electron populations 1.20711 0.88783 1.04155 1.02552 1.19491 0.97884 0.90437 0.97649 1.19861 0.92652 0.99313 1.05666 1.25429 1.00529 1.03469 1.10337 1.83245 1.05645 0.96399 1.68669 1.24907 0.96225 0.98399 1.17079 1.16406 0.85859 0.81449 0.78482 1.90850 1.13787 1.83915 1.48080 1.48629 1.04819 1.08539 1.71964 1.21986 0.82753 0.98471 1.00423 1.22612 0.98882 0.94160 1.01290 1.23112 0.93668 0.99038 1.01022 1.20077 0.94619 0.76185 0.95630 0.94600 1.20868 1.03400 1.08145 1.20842 0.90356 1.24873 0.94594 0.97499 0.95615 1.69891 1.14883 1.29999 1.38339 0.86980 0.79075 0.81053 0.83182 1.20314 1.21234 1.18756 0.91059 0.92208 0.88413 0.84555 0.82239 0.91780 0.92193 0.90950 0.91345 0.90618 0.91259 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.57 36.01 0.34 -1.34 16 2 C -0.04 -0.67 5.90 -105.47 -0.62 -1.29 16 3 C -0.14 -1.92 9.98 -41.41 -0.41 -2.33 16 4 C -0.26 -3.16 10.92 29.18 0.32 -2.84 16 5 S 0.19 2.59 18.48 -107.50 -1.99 0.60 16 6 C -0.25 -4.47 6.38 -36.79 -0.23 -4.71 16 7 C 0.59 13.35 7.44 -12.89 -0.10 13.25 16 8 O -0.49 -13.03 12.97 5.19 0.07 -12.96 16 9 N -0.60 -13.00 3.24 -165.78 -0.54 -13.53 16 10 C 0.09 1.44 5.18 -3.07 -0.02 1.42 16 11 C -0.13 -1.97 6.95 -24.90 -0.17 -2.14 16 12 C -0.13 -2.53 6.35 -24.47 -0.16 -2.68 16 13 C 0.24 5.61 2.52 -67.45 -0.17 5.44 16 14 H 0.04 0.89 5.63 -51.93 -0.29 0.60 16 15 C -0.49 -14.22 7.37 -34.44 -0.25 -14.48 16 16 H 0.08 2.55 7.72 -52.49 -0.41 2.15 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -27.86 13.96 55.43 0.77 -27.08 16 19 Si 0.87 21.54 27.08 -169.99 -4.60 16.94 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.26 -5.96 5.90 56.52 0.33 -5.63 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 1.95 6.00 -51.93 -0.31 1.64 16 26 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.06 0.95 6.70 -51.92 -0.35 0.61 16 29 H 0.06 0.85 7.13 -51.93 -0.37 0.48 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 33 H 0.07 1.31 7.46 -51.93 -0.39 0.92 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -33.34 285.56 -7.82 -41.16 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.27 Total: 0.13 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.57 Total: -9.55 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.24 Total: -40.62 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.60 Total: 16.94 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.99 Total: 0.60 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.34 -7.82 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.767 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds