Wall clock time and date at job start Mon Mar 30 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37475 * 123.35460 * 2 1 4 4 C 1.33814 * 115.10476 * 180.02562 * 3 2 1 5 5 S 1.70621 * 110.95312 * 0.02562 * 4 3 2 6 6 C 1.36646 * 123.35253 * 180.02562 * 2 1 3 7 7 C 1.46589 * 125.45578 * 359.97438 * 6 2 1 8 8 O 1.21703 * 119.99955 * 353.43335 * 7 6 2 9 9 N 1.34776 * 119.99945 * 173.42330 * 7 6 2 10 10 C 1.47024 * 125.65037 * 5.06413 * 9 7 6 11 11 C 1.54317 * 107.27267 * 181.02163 * 10 9 7 12 12 C 1.55154 * 102.94346 * 22.18918 * 11 10 9 13 13 C 1.47428 * 125.64889 * 184.75211 * 9 7 6 14 14 H 1.09000 * 110.36205 * 274.74825 * 13 9 7 15 15 C 1.50700 * 110.36432 * 37.07346 * 13 9 7 16 16 H 1.07996 * 120.00233 * 25.31353 * 15 13 9 17 17 C 1.37879 * 119.99685 * 205.31239 * 15 13 9 18 18 N 1.31515 * 119.99769 * 184.89011 * 17 15 13 19 19 Si 1.86803 * 120.00013 * 4.88672 * 17 15 13 20 20 H 1.48498 * 109.46896 * 94.64757 * 19 17 15 21 21 H 1.48501 * 109.46988 * 214.64510 * 19 17 15 22 22 H 1.48495 * 109.47113 * 334.64527 * 19 17 15 23 23 H 1.08995 * 109.46978 * 273.01713 * 1 2 3 24 24 H 1.09000 * 109.47127 * 33.01338 * 1 2 3 25 25 H 1.08999 * 109.47195 * 153.01373 * 1 2 3 26 26 H 1.07999 * 122.44420 * 0.04267 * 3 2 1 27 27 H 1.07990 * 124.52583 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.87720 * 300.44139 * 10 9 7 29 29 H 1.09001 * 109.88166 * 61.59669 * 10 9 7 30 30 H 1.09005 * 110.71968 * 140.55916 * 11 10 9 31 31 H 1.09009 * 110.71951 * 263.65172 * 11 10 9 32 32 H 1.09002 * 111.00150 * 82.57362 * 12 11 10 33 33 H 1.09000 * 111.00506 * 206.38556 * 12 11 10 34 34 H 0.97003 * 119.99971 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9563 -0.0005 5 16 3.9624 -0.7081 -0.0018 6 6 2.2583 -1.1414 -0.0005 7 6 1.7284 -2.5082 -0.0006 8 8 0.5322 -2.6971 0.1204 9 7 2.5658 -3.5556 -0.1348 10 6 4.0333 -3.4787 -0.1837 11 6 4.5615 -4.9166 -0.3705 12 6 3.3437 -5.6573 -0.9833 13 6 2.1625 -4.9689 -0.2504 14 1 2.0207 -5.4049 0.7385 15 6 0.8996 -5.0890 -1.0639 16 1 0.6490 -4.3275 -1.7875 17 6 0.0643 -6.1711 -0.8844 18 7 -0.9865 -6.3263 -1.6599 19 14 0.4252 -7.4168 0.4600 20 1 -0.3415 -7.0628 1.6815 21 1 0.0259 -8.7712 0.0001 22 1 1.8780 -7.4066 0.7672 23 1 -0.3633 0.0541 1.0262 24 1 -0.3633 0.8617 -0.5599 25 1 -0.3633 -0.9158 -0.4663 26 1 1.8201 2.1334 0.0007 27 1 4.3206 1.7490 -0.0002 28 1 4.3440 -2.8575 -1.0238 29 1 4.4139 -3.0620 0.7488 30 1 5.4073 -4.9304 -1.0579 31 1 4.8389 -5.3532 0.5890 32 1 3.2884 -5.4942 -2.0596 33 1 3.3776 -6.7221 -0.7529 34 1 -1.5745 -7.0875 -1.5334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:07 Heat of formation + Delta-G solvation = -19.763373 kcal Electronic energy + Delta-G solvation = -18240.671004 eV Core-core repulsion = 15457.341576 eV Total energy + Delta-G solvation = -2783.329429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95084 -39.22914 -37.76826 -34.75517 -32.71278 -31.78602 -30.91593 -28.88783 -26.42178 -24.78807 -23.70940 -22.19659 -21.00421 -19.45407 -19.05101 -18.66293 -17.07348 -16.76967 -16.41360 -15.90741 -15.63097 -15.19664 -14.64885 -14.42952 -14.38373 -14.31506 -13.76182 -13.46686 -13.28364 -13.03549 -13.01233 -12.87015 -12.69646 -12.45532 -12.17193 -11.78525 -11.59160 -11.44523 -11.29965 -10.80037 -10.55668 -9.77947 -9.46834 -9.14753 -8.27241 -6.27695 -0.36788 0.59787 1.06402 1.28723 1.34585 1.42882 1.50481 2.19343 2.33259 2.39915 3.10022 3.71404 3.81174 4.02058 4.11753 4.20017 4.31824 4.44250 4.48710 4.57968 4.67731 4.74741 4.77403 5.00341 5.04550 5.09610 5.11929 5.21671 5.40097 5.45574 5.55803 5.58432 5.62929 6.32382 6.64630 6.85789 7.30370 7.45640 8.91562 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.007343 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.192266 B = 3812.279043 C = 4658.517590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.042 4.042 3 C -0.157 4.157 4 C -0.233 4.233 5 S 0.252 5.748 6 C -0.306 4.306 7 C 0.578 3.422 8 O -0.558 6.558 9 N -0.615 5.615 10 C 0.080 3.920 11 C -0.116 4.116 12 C -0.127 4.127 13 C 0.227 3.773 14 H 0.030 0.970 15 C -0.492 4.492 16 H 0.015 0.985 17 C 0.007 3.993 18 N -0.952 5.952 19 Si 0.941 3.059 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.222 1.222 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.166 0.834 27 H 0.204 0.796 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.180 11.972 5.266 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.371 4.371 5 S 0.521 5.479 6 C -0.426 4.426 7 C 0.367 3.633 8 O -0.439 6.439 9 N -0.349 5.349 10 C -0.043 4.043 11 C -0.153 4.153 12 C -0.166 4.166 13 C 0.125 3.875 14 H 0.048 0.952 15 C -0.531 4.531 16 H 0.033 0.967 17 C -0.189 4.189 18 N -0.593 5.593 19 Si 0.764 3.236 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.144 1.144 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.184 0.816 27 H 0.221 0.779 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.781 11.019 5.293 21.578 hybrid contribution -2.411 0.251 0.175 2.430 sum 15.370 11.270 5.468 19.828 Atomic orbital electron populations 1.20629 0.89875 1.02901 1.02679 1.19792 0.97806 0.91566 0.96666 1.20003 0.93008 0.99226 1.06511 1.25992 1.00846 1.03837 1.06383 1.82789 1.00872 0.96934 1.67309 1.24596 1.00226 0.96236 1.21521 1.17148 0.85394 0.83462 0.77251 1.90800 1.16577 1.85399 1.51103 1.48687 1.07393 1.07356 1.71419 1.22377 0.79257 1.00230 1.02464 1.22659 0.97660 0.91952 1.03042 1.22936 0.93982 0.99719 0.99921 1.20050 0.94143 0.78585 0.94730 0.95227 1.21010 1.05910 1.06115 1.20024 0.96654 1.25875 0.94346 1.00273 0.98446 1.70078 1.16793 1.31400 1.41017 0.85848 0.81145 0.77876 0.78713 1.21281 1.20250 1.14417 0.90749 0.89263 0.93201 0.81622 0.77886 0.90302 0.89490 0.86950 0.88988 0.92062 0.90178 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.52 9.57 71.24 0.68 -2.84 16 2 C -0.04 -1.39 5.90 -20.42 -0.12 -1.51 16 3 C -0.16 -3.68 9.98 21.08 0.21 -3.47 16 4 C -0.23 -4.47 10.92 66.81 0.73 -3.74 16 5 S 0.25 5.87 18.48 -56.49 -1.04 4.82 16 6 C -0.31 -11.15 6.38 24.08 0.15 -11.00 16 7 C 0.58 27.49 7.44 86.42 0.64 28.14 16 8 O -0.56 -32.54 12.97 -4.36 -0.06 -32.60 16 9 N -0.62 -26.74 3.24 -796.61 -2.58 -29.32 16 10 C 0.08 2.34 5.18 86.73 0.45 2.79 16 11 C -0.12 -2.95 6.95 31.78 0.22 -2.72 16 12 C -0.13 -4.73 6.35 32.06 0.20 -4.53 16 13 C 0.23 10.96 2.52 44.80 0.11 11.08 16 14 H 0.03 1.47 5.63 -2.39 -0.01 1.45 16 15 C -0.49 -30.26 7.37 25.60 0.19 -30.08 16 16 H 0.02 1.09 7.72 -2.91 -0.02 1.07 16 17 C 0.01 0.43 5.47 84.66 0.46 0.89 16 18 N -0.95 -63.54 13.96 21.45 0.30 -63.25 16 19 Si 0.94 45.68 27.08 68.60 1.86 47.54 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.22 -9.19 5.90 99.48 0.59 -8.60 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.05 2.21 6.00 -2.39 -0.01 2.20 16 26 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 27 H 0.20 2.18 8.06 -2.92 -0.02 2.16 16 28 H 0.08 2.08 6.70 -2.39 -0.02 2.06 16 29 H 0.09 2.10 7.13 -2.39 -0.02 2.09 16 30 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 33 H 0.08 2.80 7.46 -2.39 -0.02 2.78 16 34 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -84.02 285.56 3.40 -80.62 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.99 Total: 9.17 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.94 Total: -16.99 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -2.28 Total: -92.57 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.06 Total: -32.60 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.86 Total: 47.54 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.04 Total: 4.82 kcal Total: -84.02 3.40 -80.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -84.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds