Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30016 * 126.86117 * 2 1 4 4 O 1.20853 * 111.95606 * 179.97438 * 3 2 1 5 5 C 1.33983 * 111.84716 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.87338 * 180.02562 * 5 4 3 7 7 C 1.36630 * 106.25016 * 359.97438 * 5 4 3 8 8 C 1.48413 * 128.16219 * 180.02562 * 7 5 4 9 9 N 1.31008 * 121.27866 * 359.71581 * 8 7 5 10 10 S 1.69947 * 105.63739 * 179.97438 * 9 8 7 11 11 C 1.72258 * 94.66096 * 0.29133 * 10 9 8 12 12 C 1.50700 * 127.37047 * 179.84811 * 11 10 9 13 13 C 1.50699 * 109.47339 * 269.97758 * 12 11 10 14 14 H 1.07994 * 120.00024 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99598 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00409 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99516 * 17 15 13 19 19 H 1.48497 * 109.47275 * 209.99933 * 17 15 13 20 20 H 1.48502 * 109.46864 * 329.99755 * 17 15 13 21 21 N 1.30751 * 105.25842 * 359.82977 * 11 10 9 22 22 H 1.09003 * 109.47112 * 90.02323 * 1 2 3 23 23 H 1.09000 * 109.47176 * 210.02225 * 1 2 3 24 24 H 1.09001 * 109.47449 * 330.01954 * 1 2 3 25 25 H 1.08997 * 109.47140 * 359.97184 * 6 5 4 26 26 H 1.08999 * 109.47153 * 119.97593 * 6 5 4 27 27 H 1.09006 * 109.46772 * 239.97495 * 6 5 4 28 28 H 1.09004 * 109.47034 * 29.97572 * 12 11 10 29 29 H 1.09006 * 109.46911 * 149.97534 * 12 11 10 30 30 H 0.97003 * 119.99446 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0402 0.0000 4 8 3.4548 0.7294 0.0005 5 6 3.6167 -0.6006 0.0004 6 6 4.9227 -1.3526 0.0014 7 6 2.3608 -1.1387 0.0003 8 6 1.9775 -2.5725 0.0006 9 7 2.8834 -3.5188 -0.0045 10 16 2.0180 -4.9814 -0.0012 11 6 0.4691 -4.2276 -0.0018 12 6 -0.8774 -4.9043 -0.0030 13 6 -1.3257 -5.1287 -1.4241 14 1 -0.6985 -4.8126 -2.2445 15 6 -2.5370 -5.7367 -1.6771 16 7 -3.3011 -6.1212 -0.6781 17 14 -3.0924 -6.0155 -3.4387 18 1 -2.6114 -7.3406 -3.9055 19 1 -4.5755 -5.9766 -3.5022 20 1 -2.5316 -4.9508 -4.3089 21 7 0.7117 -2.9428 -0.0007 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3634 0.8901 0.5135 25 1 5.7504 -0.6433 0.0018 26 1 4.9806 -1.9790 0.8915 27 1 4.9818 -1.9793 -0.8885 28 1 -0.8027 -5.8631 0.5101 29 1 -1.6019 -4.2726 0.5111 30 1 -4.1532 -6.5492 -0.8561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 98.434545 kcal Electronic energy + Delta-G solvation = -17104.022770 eV Core-core repulsion = 14222.278445 eV Total energy + Delta-G solvation = -2881.744326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.89602 -39.70068 -34.89748 -34.00767 -33.35517 -31.79027 -29.17815 -28.41049 -28.04248 -25.41878 -23.83321 -21.53258 -20.01348 -19.42070 -18.24746 -17.69524 -16.75049 -16.66723 -15.20038 -14.72932 -14.68744 -13.99086 -13.32527 -13.28603 -13.05740 -12.96755 -12.54331 -12.42734 -12.25144 -12.16665 -11.72868 -11.20275 -11.01507 -10.90237 -10.59605 -10.34897 -10.12609 -9.95736 -9.52608 -9.32749 -9.17249 -8.65265 -8.31331 -6.29652 -4.36002 0.73016 1.47567 1.74481 2.06478 2.11345 3.03078 3.19719 3.26547 3.29937 3.38156 3.91755 4.26347 4.45399 4.53993 4.91169 5.07829 5.23236 5.40792 5.43748 5.56275 5.78934 5.82067 5.91979 5.96067 6.02033 6.22861 6.51596 7.01297 7.12495 7.63138 7.88096 8.06914 8.29023 8.65062 9.29456 10.80393 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.005417 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.057841 B = 5167.264953 C = 5774.468423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.069 3.931 3 N -0.373 5.373 4 O 0.094 5.906 5 C 0.013 3.987 6 C -0.065 4.065 7 C -0.135 4.135 8 C 0.342 3.658 9 N -0.500 5.500 10 S 0.196 5.804 11 C 0.170 3.830 12 C 0.086 3.914 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.272 1.272 21 N -0.523 5.523 22 H 0.083 0.917 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.175 6.418 2.271 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 N -0.082 5.082 4 O 0.035 5.965 5 C -0.055 4.055 6 C -0.123 4.123 7 C -0.144 4.144 8 C 0.055 3.945 9 N -0.332 5.332 10 S 0.339 5.661 11 C -0.115 4.115 12 C 0.046 3.954 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.245 5.245 22 H 0.101 0.899 23 H 0.121 0.879 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.955 7.056 2.332 14.077 hybrid contribution -1.138 -0.315 -0.985 1.537 sum 10.818 6.741 1.347 12.817 Atomic orbital electron populations 1.20319 0.84777 1.04370 1.04065 1.23622 0.99408 0.86902 0.99341 1.73723 0.89010 1.23583 1.21906 1.84781 1.21753 1.21900 1.68072 1.24592 0.97887 0.83699 0.99305 1.20364 0.88565 0.98184 1.05169 1.18347 0.92082 0.90080 1.13871 1.20417 0.84586 0.92397 0.97148 1.77462 1.26948 0.98729 1.30111 1.84830 0.99094 1.15802 1.66361 1.30187 1.03336 0.89921 0.88037 1.18287 0.82128 0.95226 0.99789 1.20799 1.04546 1.40800 0.89878 0.92106 1.24932 0.95954 0.94806 0.97934 1.69926 1.11973 1.39514 1.30997 0.86392 0.77946 0.78844 0.83772 1.20244 1.20826 1.19667 1.67310 1.17856 1.16103 1.23201 0.89883 0.87886 0.91054 0.90129 0.88645 0.88626 0.92734 0.91984 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.05 36.00 0.36 -0.81 16 2 C 0.07 1.14 7.36 -81.79 -0.60 0.54 16 3 N -0.37 -6.02 12.04 33.67 0.41 -5.61 16 4 O 0.09 1.37 11.17 17.34 0.19 1.57 16 5 C 0.01 0.18 7.54 -34.89 -0.26 -0.08 16 6 C -0.07 -0.68 9.32 36.01 0.34 -0.34 16 7 C -0.13 -2.29 6.30 -104.72 -0.66 -2.95 16 8 C 0.34 6.44 7.52 -158.87 -1.20 5.25 16 9 N -0.50 -8.96 11.05 29.55 0.33 -8.63 16 10 S 0.20 3.53 23.80 -107.50 -2.56 0.97 16 11 C 0.17 3.55 6.98 -12.74 -0.09 3.46 16 12 C 0.09 2.01 5.60 -29.04 -0.16 1.85 16 13 C -0.52 -13.39 9.09 -34.44 -0.31 -13.70 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.99 13.29 55.43 0.74 -23.26 16 17 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.52 -10.72 8.75 -11.25 -0.10 -10.82 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.10 1.70 6.76 -51.93 -0.35 1.35 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 285.98 15.07 4.31 4.31 Total: -1.00 -27.80 285.98 -7.24 -35.04 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -2.85 Total: -3.64 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.69 Total: -5.14 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 1.37 Total: -48.32 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.56 Total: 0.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.80 -7.24 -35.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.475 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds