Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30016 * 126.86117 * 2 1 4 4 O 1.20853 * 111.95606 * 179.97438 * 3 2 1 5 5 C 1.33983 * 111.84716 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.87338 * 180.02562 * 5 4 3 7 7 C 1.36630 * 106.25016 * 359.97438 * 5 4 3 8 8 C 1.48413 * 128.16219 * 180.02562 * 7 5 4 9 9 N 1.31008 * 121.27866 * 359.71581 * 8 7 5 10 10 S 1.69947 * 105.63739 * 179.97438 * 9 8 7 11 11 C 1.72258 * 94.66096 * 0.29133 * 10 9 8 12 12 C 1.50700 * 127.37047 * 179.84811 * 11 10 9 13 13 C 1.50699 * 109.47339 * 269.97758 * 12 11 10 14 14 H 1.07994 * 120.00024 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99598 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00409 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99516 * 17 15 13 19 19 H 1.48497 * 109.47275 * 209.99933 * 17 15 13 20 20 H 1.48502 * 109.46864 * 329.99755 * 17 15 13 21 21 N 1.30751 * 105.25842 * 359.82977 * 11 10 9 22 22 H 1.09003 * 109.47112 * 90.02323 * 1 2 3 23 23 H 1.09000 * 109.47176 * 210.02225 * 1 2 3 24 24 H 1.09001 * 109.47449 * 330.01954 * 1 2 3 25 25 H 1.08997 * 109.47140 * 359.97184 * 6 5 4 26 26 H 1.08999 * 109.47153 * 119.97593 * 6 5 4 27 27 H 1.09006 * 109.46772 * 239.97495 * 6 5 4 28 28 H 1.09004 * 109.47034 * 29.97572 * 12 11 10 29 29 H 1.09006 * 109.46911 * 149.97534 * 12 11 10 30 30 H 0.97003 * 119.99446 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0402 0.0000 4 8 3.4548 0.7294 0.0005 5 6 3.6167 -0.6006 0.0004 6 6 4.9227 -1.3526 0.0014 7 6 2.3608 -1.1387 0.0003 8 6 1.9775 -2.5725 0.0006 9 7 2.8834 -3.5188 -0.0045 10 16 2.0180 -4.9814 -0.0012 11 6 0.4691 -4.2276 -0.0018 12 6 -0.8774 -4.9043 -0.0030 13 6 -1.3257 -5.1287 -1.4241 14 1 -0.6985 -4.8126 -2.2445 15 6 -2.5370 -5.7367 -1.6771 16 7 -3.3011 -6.1212 -0.6781 17 14 -3.0924 -6.0155 -3.4387 18 1 -2.6114 -7.3406 -3.9055 19 1 -4.5755 -5.9766 -3.5022 20 1 -2.5316 -4.9508 -4.3089 21 7 0.7117 -2.9428 -0.0007 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3634 0.8901 0.5135 25 1 5.7504 -0.6433 0.0018 26 1 4.9806 -1.9790 0.8915 27 1 4.9818 -1.9793 -0.8885 28 1 -0.8027 -5.8631 0.5101 29 1 -1.6019 -4.2726 0.5111 30 1 -4.1532 -6.5492 -0.8561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 83.306414 kcal Electronic energy + Delta-G solvation = -17104.678775 eV Core-core repulsion = 14222.278445 eV Total energy + Delta-G solvation = -2882.400331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.11546 -41.20779 -36.27072 -35.56954 -34.75313 -33.35593 -30.90878 -29.64640 -29.13099 -26.95792 -25.49794 -23.02389 -21.27947 -20.87171 -19.72385 -18.91129 -18.64986 -17.99723 -16.83391 -16.28348 -16.20376 -15.26054 -14.75781 -14.40575 -14.35204 -14.25068 -14.03975 -13.94645 -13.56453 -13.36873 -13.12577 -12.94620 -12.75997 -12.32141 -12.10978 -11.99166 -11.95488 -11.36005 -11.10470 -10.74246 -10.66353 -10.60477 -9.71089 -8.28252 -6.41025 -0.73305 0.20308 0.23343 0.59217 0.77787 1.43222 1.44685 1.54699 1.88367 1.92287 2.38924 2.56728 3.07135 3.20722 3.36571 3.69375 3.94647 4.24437 4.40828 4.53772 4.61594 4.63031 4.65554 4.70733 4.85908 5.12800 5.13275 5.20583 5.26371 5.62022 5.93763 6.54835 6.65175 7.09952 7.27881 8.82114 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.005417 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.057841 B = 5167.264953 C = 5774.468423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.058 3.942 3 N -0.382 5.382 4 O 0.103 5.897 5 C 0.040 3.960 6 C -0.066 4.066 7 C -0.173 4.173 8 C 0.337 3.663 9 N -0.492 5.492 10 S 0.246 5.754 11 C 0.141 3.859 12 C 0.096 3.904 13 C -0.534 4.534 14 H 0.054 0.946 15 C 0.023 3.977 16 N -0.917 5.917 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.273 1.273 21 N -0.535 5.535 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.905 6.702 1.608 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 N -0.092 5.092 4 O 0.044 5.956 5 C -0.028 4.028 6 C -0.123 4.123 7 C -0.182 4.182 8 C 0.050 3.950 9 N -0.324 5.324 10 S 0.390 5.610 11 C -0.145 4.145 12 C 0.055 3.945 13 C -0.574 4.574 14 H 0.072 0.928 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.197 1.197 21 N -0.257 5.257 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.690 7.343 1.673 15.625 hybrid contribution -1.538 -0.366 -0.737 1.744 sum 12.153 6.977 0.936 14.044 Atomic orbital electron populations 1.20276 0.84444 1.04428 1.04037 1.23810 0.99958 0.87078 0.99519 1.73706 0.89447 1.23564 1.22450 1.84775 1.21128 1.22158 1.67557 1.25188 0.98385 0.83280 0.95996 1.20598 0.87656 0.98711 1.05300 1.18474 0.93581 0.89336 1.16823 1.20584 0.84012 0.93374 0.97030 1.77430 1.26566 0.98624 1.29816 1.84581 0.96488 1.15041 1.64937 1.29671 1.03871 0.90712 0.90206 1.17926 0.83312 0.94743 0.98472 1.21036 1.04764 1.40685 0.90873 0.92809 1.25693 0.96005 0.94516 1.01585 1.70015 1.12407 1.40240 1.32845 0.85468 0.77588 0.78917 0.79260 1.19225 1.20343 1.19734 1.67290 1.19184 1.16252 1.22963 0.89923 0.89625 0.89141 0.86556 0.88134 0.88395 0.93213 0.94253 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.05 71.24 0.72 -1.54 16 2 C 0.06 1.88 7.36 43.84 0.32 2.20 16 3 N -0.38 -11.83 12.04 -48.51 -0.58 -12.42 16 4 O 0.10 2.78 11.17 72.25 0.81 3.58 16 5 C 0.04 1.03 7.54 25.31 0.19 1.22 16 6 C -0.07 -1.14 9.32 71.24 0.66 -0.47 16 7 C -0.17 -5.68 6.30 -19.93 -0.13 -5.81 16 8 C 0.34 12.43 7.52 138.26 1.04 13.47 16 9 N -0.49 -16.81 11.05 -60.42 -0.67 -17.47 16 10 S 0.25 8.60 23.80 -56.49 -1.34 7.25 16 11 C 0.14 5.90 6.98 88.27 0.62 6.52 16 12 C 0.10 4.60 5.60 29.10 0.16 4.76 16 13 C -0.53 -27.86 9.09 25.60 0.23 -27.62 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.02 1.19 5.46 84.65 0.46 1.65 16 16 N -0.92 -50.19 13.29 21.45 0.28 -49.90 16 17 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 N -0.53 -22.07 8.75 -189.50 -1.66 -23.73 16 22 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.09 2.90 6.76 -2.39 -0.02 2.89 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.10 1.75 8.14 -2.38 -0.02 1.74 16 28 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -58.82 285.98 4.32 -54.50 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: 1.18 Total: 0.46 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 4.28 Total: -5.62 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -2.62 Total: -103.52 kcal Atomic # 8 Polarization: 2.78 SS G_CDS: 0.81 Total: 3.58 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 8.60 SS G_CDS: -1.34 Total: 7.25 kcal Total: -58.82 4.32 -54.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.806 kcal (2) G-P(sol) polarization free energy of solvation -58.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds