Wall clock time and date at job start Mon Mar 30 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33820 * 122.44900 * 2 1 4 4 S 1.70612 * 110.95537 * 180.02562 * 3 2 1 5 5 C 1.75823 * 91.56565 * 0.02562 * 4 3 2 6 6 C 1.46583 * 125.46270 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00692 * 180.02562 * 6 5 4 8 8 N 1.34784 * 119.99671 * 0.02656 * 6 5 4 9 9 C 1.47014 * 125.64695 * 354.99011 * 8 6 5 10 10 C 1.54326 * 107.27046 * 178.98169 * 9 8 6 11 11 C 1.55151 * 102.94071 * 337.80453 * 10 9 8 12 12 C 1.47421 * 125.64650 * 175.03931 * 8 6 5 13 13 H 1.08996 * 110.46315 * 85.20245 * 12 8 6 14 14 C 1.50706 * 110.36735 * 322.92540 * 12 8 6 15 15 H 1.07994 * 119.99819 * 329.41901 * 14 12 8 16 16 C 1.37872 * 119.99839 * 149.42353 * 14 12 8 17 17 N 1.31517 * 119.99917 * 182.67296 * 16 14 12 18 18 Si 1.86801 * 120.00458 * 2.67095 * 16 14 12 19 19 H 1.48496 * 109.47207 * 275.12365 * 18 16 14 20 20 H 1.48492 * 109.47373 * 155.12177 * 18 16 14 21 21 H 1.48505 * 109.46895 * 35.12249 * 18 16 14 22 22 C 1.36652 * 109.08534 * 0.23832 * 5 4 3 23 23 H 1.09000 * 109.47061 * 89.97500 * 1 2 3 24 24 H 1.09003 * 109.46837 * 209.97212 * 1 2 3 25 25 H 1.08996 * 109.47285 * 329.97641 * 1 2 3 26 26 H 1.08002 * 124.51925 * 0.04160 * 3 2 1 27 27 H 1.09002 * 109.88402 * 59.56100 * 9 8 6 28 28 H 1.09006 * 109.88573 * 298.39844 * 9 8 6 29 29 H 1.09001 * 110.71799 * 219.44806 * 10 9 8 30 30 H 1.08992 * 110.72145 * 96.17098 * 10 9 8 31 31 H 1.09004 * 111.01197 * 277.42927 * 11 10 9 32 32 H 1.08998 * 111.03897 * 153.59040 * 11 10 9 33 33 H 0.96994 * 120.00010 * 179.97438 * 17 16 14 34 34 H 1.07999 * 123.35434 * 179.75521 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 -0.0007 5 6 3.5937 -0.9426 -0.0018 6 6 4.6231 -1.9861 -0.0033 7 8 4.3003 -3.1595 -0.0045 8 7 5.9274 -1.6461 -0.0035 9 6 6.4562 -0.2782 -0.1066 10 6 7.9949 -0.3755 -0.0387 11 6 8.2261 -1.7378 0.6670 12 6 7.0599 -2.5843 0.0986 13 1 7.3197 -2.9764 -0.8846 14 6 6.7233 -3.7123 1.0398 15 1 6.0516 -3.5421 1.8681 16 6 7.2731 -4.9613 0.8433 17 7 6.9387 -5.9585 1.6329 18 14 8.4927 -5.2373 -0.5444 19 1 7.7558 -5.5174 -1.8028 20 1 9.3653 -6.3925 -0.2141 21 1 9.3268 -4.0211 -0.7195 22 6 2.2446 -1.1601 -0.0069 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 1.8024 2.1232 0.0006 27 1 6.0860 0.3258 0.7219 28 1 6.1543 0.1655 -1.0553 29 1 8.4071 0.4409 0.5544 30 1 8.4254 -0.3819 -1.0400 31 1 8.1440 -1.6362 1.7492 32 1 9.1900 -2.1640 0.3888 33 1 7.3252 -6.8373 1.4944 34 1 1.8020 -2.1452 -0.0124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:08 Heat of formation + Delta-G solvation = 0.928519 kcal Electronic energy + Delta-G solvation = -17963.130272 eV Core-core repulsion = 15180.698111 eV Total energy + Delta-G solvation = -2782.432161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29325 -38.03766 -36.30863 -32.62147 -31.32567 -30.32422 -29.17022 -27.59198 -24.79572 -24.14221 -21.81882 -20.48815 -18.97703 -18.64971 -17.49579 -16.97818 -15.57380 -15.38089 -15.03728 -14.22217 -14.07978 -13.57867 -13.42857 -13.09338 -12.84726 -12.62127 -12.45501 -12.05642 -11.95650 -11.86558 -11.68576 -11.41771 -11.16079 -10.83847 -10.61625 -10.14410 -10.07544 -9.86476 -9.37764 -9.04519 -8.58759 -8.45726 -8.23323 -7.65076 -6.01625 -3.98214 0.82694 1.73997 2.14790 2.62478 3.29563 3.35346 3.38438 3.75554 3.96779 4.43725 4.95220 5.02870 5.07581 5.25805 5.32005 5.39600 5.42871 5.55907 5.59366 5.68139 5.86378 5.93066 6.00314 6.10602 6.14933 6.39393 6.46785 6.58948 6.60898 6.67449 7.12184 7.30450 7.57474 8.41029 8.55170 9.05444 9.08073 9.58822 11.12130 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.006482 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.858987 B = 4318.650955 C = 5086.452012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.114 4.114 3 C -0.269 4.269 4 S 0.197 5.803 5 C -0.233 4.233 6 C 0.589 3.411 7 O -0.491 6.491 8 N -0.605 5.605 9 C 0.089 3.911 10 C -0.131 4.131 11 C -0.131 4.131 12 C 0.236 3.764 13 H 0.034 0.966 14 C -0.495 4.495 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.074 4.074 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.159 0.841 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 16.621 -4.515 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.406 4.406 4 S 0.466 5.534 5 C -0.354 4.354 6 C 0.375 3.625 7 O -0.366 6.366 8 N -0.340 5.340 9 C -0.037 4.037 10 C -0.170 4.170 11 C -0.170 4.170 12 C 0.136 3.864 13 H 0.052 0.948 14 C -0.534 4.534 15 H 0.094 0.906 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.699 3.301 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.106 4.106 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.177 0.823 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.025 16.663 -4.472 17.716 hybrid contribution -0.803 -0.892 -0.696 1.387 sum -4.827 15.771 -5.169 17.284 Atomic orbital electron populations 1.20491 0.90006 1.02567 1.02060 1.18730 0.97520 0.91700 1.04736 1.25331 1.00724 1.02743 1.11789 1.83251 1.02187 0.99608 1.68333 1.25120 0.98456 0.96744 1.15044 1.16461 0.80428 0.87065 0.78560 1.90911 1.80245 1.17451 1.47986 1.48712 1.05551 1.07579 1.72154 1.21996 0.95760 0.85543 1.00364 1.22616 0.93332 0.99697 1.01307 1.23086 0.99754 0.93385 1.00740 1.19930 0.81530 0.88767 0.96175 0.94784 1.20839 1.28313 0.92457 1.11748 0.90553 1.24896 0.96276 0.95551 0.95802 1.69892 1.43090 1.01115 1.38756 0.86977 0.81692 0.78078 0.83331 1.20154 1.21292 1.18939 1.20624 0.91234 0.99801 0.98959 0.91460 0.91396 0.91864 0.82311 0.91905 0.92044 0.90899 0.91284 0.90635 0.91059 0.92646 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.13 36.00 0.36 -0.57 16 2 C -0.11 -1.52 5.78 -106.45 -0.62 -2.14 16 3 C -0.27 -3.30 10.67 29.18 0.31 -2.99 16 4 S 0.20 2.66 18.48 -107.50 -1.99 0.68 16 5 C -0.23 -4.25 6.38 -36.79 -0.23 -4.48 16 6 C 0.59 13.55 7.52 -12.89 -0.10 13.45 16 7 O -0.49 -13.65 15.64 5.19 0.08 -13.57 16 8 N -0.61 -13.10 3.24 -165.91 -0.54 -13.63 16 9 C 0.09 1.43 5.19 -3.07 -0.02 1.41 16 10 C -0.13 -1.96 6.95 -24.90 -0.17 -2.13 16 11 C -0.13 -2.54 6.42 -24.58 -0.16 -2.70 16 12 C 0.24 5.66 2.60 -67.57 -0.18 5.48 16 13 H 0.03 0.85 5.83 -51.93 -0.30 0.55 16 14 C -0.50 -14.37 7.23 -34.44 -0.25 -14.62 16 15 H 0.08 2.51 7.97 -52.49 -0.42 2.09 16 16 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 17 N -0.89 -28.08 13.96 55.43 0.77 -27.31 16 18 Si 0.87 21.68 26.81 -169.99 -4.56 17.12 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -5.99 6.23 56.52 0.35 -5.64 16 22 C -0.07 -1.22 9.80 -40.43 -0.40 -1.62 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.06 0.93 6.44 -50.10 -0.32 0.60 16 28 H 0.06 0.87 7.36 -51.93 -0.38 0.49 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 32 H 0.07 1.34 7.26 -51.93 -0.38 0.97 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -34.24 290.70 -7.74 -41.98 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.36 Total: -0.95 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.54 Total: -8.70 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.24 Total: -40.94 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.56 Total: 17.12 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.99 Total: 0.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.24 -7.74 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.912 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds