Wall clock time and date at job start Mon Mar 30 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33820 * 122.44900 * 2 1 4 4 S 1.70612 * 110.95537 * 180.02562 * 3 2 1 5 5 C 1.75823 * 91.56565 * 0.02562 * 4 3 2 6 6 C 1.46583 * 125.46270 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00692 * 180.02562 * 6 5 4 8 8 N 1.34784 * 119.99671 * 0.02656 * 6 5 4 9 9 C 1.47014 * 125.64695 * 354.99011 * 8 6 5 10 10 C 1.54326 * 107.27046 * 178.98169 * 9 8 6 11 11 C 1.55151 * 102.94071 * 337.80453 * 10 9 8 12 12 C 1.47421 * 125.64650 * 175.03931 * 8 6 5 13 13 H 1.08996 * 110.46315 * 85.20245 * 12 8 6 14 14 C 1.50706 * 110.36735 * 322.92540 * 12 8 6 15 15 H 1.07994 * 119.99819 * 329.41901 * 14 12 8 16 16 C 1.37872 * 119.99839 * 149.42353 * 14 12 8 17 17 N 1.31517 * 119.99917 * 182.67296 * 16 14 12 18 18 Si 1.86801 * 120.00458 * 2.67095 * 16 14 12 19 19 H 1.48496 * 109.47207 * 275.12365 * 18 16 14 20 20 H 1.48492 * 109.47373 * 155.12177 * 18 16 14 21 21 H 1.48505 * 109.46895 * 35.12249 * 18 16 14 22 22 C 1.36652 * 109.08534 * 0.23832 * 5 4 3 23 23 H 1.09000 * 109.47061 * 89.97500 * 1 2 3 24 24 H 1.09003 * 109.46837 * 209.97212 * 1 2 3 25 25 H 1.08996 * 109.47285 * 329.97641 * 1 2 3 26 26 H 1.08002 * 124.51925 * 0.04160 * 3 2 1 27 27 H 1.09002 * 109.88402 * 59.56100 * 9 8 6 28 28 H 1.09006 * 109.88573 * 298.39844 * 9 8 6 29 29 H 1.09001 * 110.71799 * 219.44806 * 10 9 8 30 30 H 1.08992 * 110.72145 * 96.17098 * 10 9 8 31 31 H 1.09004 * 111.01197 * 277.42927 * 11 10 9 32 32 H 1.08998 * 111.03897 * 153.59040 * 11 10 9 33 33 H 0.96994 * 120.00010 * 179.97438 * 17 16 14 34 34 H 1.07999 * 123.35434 * 179.75521 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 -0.0007 5 6 3.5937 -0.9426 -0.0018 6 6 4.6231 -1.9861 -0.0033 7 8 4.3003 -3.1595 -0.0045 8 7 5.9274 -1.6461 -0.0035 9 6 6.4562 -0.2782 -0.1066 10 6 7.9949 -0.3755 -0.0387 11 6 8.2261 -1.7378 0.6670 12 6 7.0599 -2.5843 0.0986 13 1 7.3197 -2.9764 -0.8846 14 6 6.7233 -3.7123 1.0398 15 1 6.0516 -3.5421 1.8681 16 6 7.2731 -4.9613 0.8433 17 7 6.9387 -5.9585 1.6329 18 14 8.4927 -5.2373 -0.5444 19 1 7.7558 -5.5174 -1.8028 20 1 9.3653 -6.3925 -0.2141 21 1 9.3268 -4.0211 -0.7195 22 6 2.2446 -1.1601 -0.0069 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 1.8024 2.1232 0.0006 27 1 6.0860 0.3258 0.7219 28 1 6.1543 0.1655 -1.0553 29 1 8.4071 0.4409 0.5544 30 1 8.4254 -0.3819 -1.0400 31 1 8.1440 -1.6362 1.7492 32 1 9.1900 -2.1640 0.3888 33 1 7.3252 -6.8373 1.4944 34 1 1.8020 -2.1452 -0.0124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:08 Heat of formation + Delta-G solvation = -23.459096 kcal Electronic energy + Delta-G solvation = -17964.187798 eV Core-core repulsion = 15180.698111 eV Total energy + Delta-G solvation = -2783.489687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92883 -39.25809 -37.96148 -34.77578 -32.89790 -31.59291 -30.86511 -28.59533 -26.49166 -25.78307 -23.27222 -21.91215 -20.53540 -19.86366 -19.40499 -18.58225 -17.17515 -16.80672 -16.62664 -15.95087 -15.47955 -15.09397 -14.69852 -14.51170 -14.38265 -14.12889 -13.94329 -13.53400 -13.17164 -13.03341 -12.91043 -12.85505 -12.75095 -12.51159 -12.22638 -11.80747 -11.61877 -11.48059 -11.31632 -10.93748 -10.63895 -9.87960 -9.39301 -9.23936 -8.28465 -6.29811 -0.41741 0.54896 1.04185 1.28598 1.34026 1.42110 1.43559 2.15255 2.32342 2.35037 3.09069 3.65856 3.80289 4.07290 4.12178 4.19673 4.23866 4.43718 4.45126 4.55621 4.70792 4.76310 4.86005 4.94063 5.01738 5.06678 5.10977 5.21383 5.40387 5.44357 5.52057 5.55399 5.60430 6.28809 6.60746 6.81321 7.28392 7.39577 8.90563 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.006482 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.858987 B = 4318.650955 C = 5086.452012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.130 4.130 3 C -0.245 4.245 4 S 0.268 5.732 5 C -0.292 4.292 6 C 0.578 3.422 7 O -0.570 6.570 8 N -0.613 5.613 9 C 0.078 3.922 10 C -0.115 4.115 11 C -0.127 4.127 12 C 0.226 3.774 13 H 0.029 0.971 14 C -0.494 4.494 15 H 0.012 0.988 16 C 0.006 3.994 17 N -0.952 5.952 18 Si 0.945 3.055 19 H -0.283 1.283 20 H -0.281 1.281 21 H -0.219 1.219 22 C -0.075 4.075 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.202 0.798 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.264 0.736 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 21.499 -6.295 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C -0.382 4.382 4 S 0.537 5.463 5 C -0.412 4.412 6 C 0.366 3.634 7 O -0.450 6.450 8 N -0.346 5.346 9 C -0.045 4.045 10 C -0.153 4.153 11 C -0.166 4.166 12 C 0.125 3.875 13 H 0.047 0.953 14 C -0.532 4.532 15 H 0.031 0.969 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.767 3.233 19 H -0.210 1.210 20 H -0.206 1.206 21 H -0.141 1.141 22 C -0.109 4.109 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.219 0.781 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.952 21.638 -6.251 22.716 hybrid contribution -1.297 -2.275 -0.073 2.620 sum -4.249 19.363 -6.325 20.808 Atomic orbital electron populations 1.20554 0.87614 1.03561 1.03171 1.18899 0.99239 0.90621 1.05437 1.25882 1.00122 1.04137 1.08052 1.82733 1.02695 0.94162 1.66677 1.24721 0.97590 0.99334 1.19541 1.17205 0.81680 0.87376 0.77102 1.90844 1.81614 1.20897 1.51664 1.48740 1.04852 1.09761 1.71261 1.22429 0.96941 0.82587 1.02539 1.22672 0.92124 0.97720 1.02747 1.22913 0.97723 0.95606 1.00329 1.19950 0.84174 0.88804 0.94621 0.95323 1.20995 1.26368 0.94894 1.10979 0.96936 1.25953 0.98983 0.95048 0.99121 1.70088 1.45645 1.01836 1.41682 0.85828 0.79170 0.79877 0.78402 1.20961 1.20633 1.14147 1.20788 0.91395 1.00504 0.98261 0.90257 0.91936 0.89410 0.78064 0.90252 0.89205 0.86747 0.88853 0.91909 0.89883 0.92705 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 10.13 71.23 0.72 -0.87 16 2 C -0.13 -3.20 5.78 -21.05 -0.12 -3.32 16 3 C -0.24 -4.91 10.67 66.82 0.71 -4.20 16 4 S 0.27 6.28 18.48 -56.49 -1.04 5.24 16 5 C -0.29 -10.80 6.38 24.08 0.15 -10.65 16 6 C 0.58 28.09 7.52 86.42 0.65 28.74 16 7 O -0.57 -34.77 15.64 -4.34 -0.07 -34.84 16 8 N -0.61 -26.81 3.24 -797.03 -2.58 -29.39 16 9 C 0.08 2.26 5.19 86.73 0.45 2.71 16 10 C -0.12 -2.85 6.95 31.78 0.22 -2.63 16 11 C -0.13 -4.66 6.42 31.99 0.21 -4.45 16 12 C 0.23 10.96 2.60 44.73 0.12 11.07 16 13 H 0.03 1.42 5.83 -2.39 -0.01 1.41 16 14 C -0.49 -30.58 7.23 25.60 0.19 -30.40 16 15 H 0.01 0.89 7.97 -2.91 -0.02 0.87 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -64.28 13.96 21.45 0.30 -63.98 16 18 Si 0.94 45.88 26.81 68.60 1.84 47.71 16 19 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.22 -8.94 6.23 99.48 0.62 -8.33 16 22 C -0.07 -2.56 9.80 21.72 0.21 -2.34 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.16 8.13 -2.39 -0.02 1.15 16 25 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 26 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 27 H 0.08 2.04 6.44 -3.55 -0.02 2.01 16 28 H 0.09 2.13 7.36 -2.38 -0.02 2.11 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 2.44 8.05 -2.38 -0.02 2.42 16 32 H 0.08 2.84 7.26 -2.39 -0.02 2.82 16 33 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 34 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -86.42 290.70 3.42 -83.00 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.00 Total: 7.79 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 3.97 Total: -15.54 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -2.28 Total: -93.37 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.07 Total: -34.84 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.84 Total: 47.71 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.04 Total: 5.24 kcal Total: -86.42 3.42 -83.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -86.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds