Wall clock time and date at job start Mon Mar 30 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33813 * 122.45064 * 2 1 4 4 S 1.70614 * 110.95673 * 179.74060 * 3 2 1 5 5 C 1.75832 * 91.56233 * 0.30731 * 4 3 2 6 6 C 1.46580 * 125.45983 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00354 * 186.26186 * 6 5 4 8 8 N 1.34782 * 119.99955 * 6.25860 * 6 5 4 9 9 C 1.47423 * 125.64824 * 356.39662 * 8 6 5 10 10 C 1.54907 * 104.82916 * 155.91290 * 9 8 6 11 11 C 1.55153 * 101.58242 * 37.01029 * 10 9 8 12 12 C 1.47485 * 125.58979 * 176.42247 * 8 6 5 13 13 H 1.08998 * 109.96517 * 300.32367 * 12 8 6 14 14 C 1.50702 * 110.03437 * 61.64331 * 12 8 6 15 15 H 1.07997 * 119.99853 * 82.31482 * 14 12 8 16 16 C 1.37875 * 119.99688 * 262.31222 * 14 12 8 17 17 N 1.31510 * 120.00416 * 356.76034 * 16 14 12 18 18 Si 1.86804 * 119.99663 * 176.75941 * 16 14 12 19 19 H 1.48500 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47415 * 120.00127 * 18 16 14 21 21 H 1.48496 * 109.46963 * 240.00131 * 18 16 14 22 22 C 1.36655 * 109.08233 * 359.69419 * 5 4 3 23 23 H 1.09002 * 109.47126 * 270.02527 * 1 2 3 24 24 H 1.08996 * 109.47048 * 30.02459 * 1 2 3 25 25 H 1.09000 * 109.47138 * 150.02304 * 1 2 3 26 26 H 1.07999 * 124.52331 * 359.97438 * 3 2 1 27 27 H 1.09000 * 110.36660 * 37.07252 * 9 8 6 28 28 H 1.08994 * 110.36617 * 274.75144 * 9 8 6 29 29 H 1.09003 * 111.00264 * 278.93153 * 10 9 8 30 30 H 1.09000 * 110.99905 * 155.08564 * 10 9 8 31 31 H 1.09001 * 110.71853 * 82.86282 * 11 10 9 32 32 H 1.09009 * 110.71731 * 205.95511 * 11 10 9 33 33 H 0.97000 * 119.99830 * 180.02562 * 17 16 14 34 34 H 1.07996 * 123.34951 * 180.20556 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0072 5 6 3.5937 -0.9427 0.0008 6 6 4.6231 -1.9863 0.0024 7 8 4.3052 -3.1549 -0.1174 8 7 5.9218 -1.6516 0.1364 9 6 6.4515 -0.2780 0.2142 10 6 7.8029 -0.4157 0.9587 11 6 8.3322 -1.7617 0.3971 12 6 7.0475 -2.6000 0.2288 13 1 6.9148 -3.2521 1.0920 14 6 7.1339 -3.4231 -1.0306 15 1 7.6298 -3.0244 -1.9032 16 6 6.5798 -4.6850 -1.0687 17 7 6.0322 -5.1957 0.0124 18 14 6.6069 -5.6694 -2.6561 19 1 7.2749 -4.8762 -3.7190 20 1 7.3519 -6.9358 -2.4407 21 1 5.2149 -5.9784 -3.0707 22 6 2.2446 -1.1601 0.0005 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8026 2.1231 -0.0004 27 1 5.7708 0.3597 0.7782 28 1 6.6089 0.1251 -0.7862 29 1 7.6509 -0.4748 2.0365 30 1 8.4741 0.4046 0.7048 31 1 8.8236 -1.6118 -0.5642 32 1 9.0114 -2.2350 1.1062 33 1 5.6427 -6.0837 -0.0144 34 1 1.8019 -2.1452 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:10 Heat of formation + Delta-G solvation = 2.751183 kcal Electronic energy + Delta-G solvation = -18122.089890 eV Core-core repulsion = 15339.736766 eV Total energy + Delta-G solvation = -2782.353124 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.90252 -37.81766 -35.95896 -32.58635 -31.05530 -30.06032 -28.55254 -27.41706 -24.64125 -24.04288 -21.76826 -20.24879 -18.87252 -18.47984 -17.22615 -16.37964 -15.44375 -15.30940 -14.59578 -14.27724 -13.95464 -13.49830 -13.21918 -12.91493 -12.49805 -12.42602 -12.11193 -11.86037 -11.77057 -11.69949 -11.42709 -11.26574 -10.93126 -10.82124 -10.44870 -10.16592 -9.99939 -9.44764 -9.15700 -8.85188 -8.38848 -8.18234 -8.06260 -7.25690 -5.89273 -3.99659 1.02039 1.91585 2.31508 2.80020 3.36207 3.46305 3.47732 4.11353 4.32557 4.53524 5.12567 5.17650 5.25713 5.42621 5.52714 5.57849 5.60686 5.67223 5.75885 5.82020 6.01579 6.05491 6.20085 6.27339 6.32366 6.61797 6.63362 6.74407 6.75228 6.86618 7.63959 7.84595 7.96271 8.36293 8.78074 9.11993 9.49729 9.68962 11.15198 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.007541 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.866813 B = 3712.105582 C = 4719.355830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.113 4.113 3 C -0.280 4.280 4 S 0.193 5.807 5 C -0.222 4.222 6 C 0.575 3.425 7 O -0.479 6.479 8 N -0.602 5.602 9 C 0.089 3.911 10 C -0.131 4.131 11 C -0.120 4.120 12 C 0.249 3.751 13 H 0.066 0.934 14 C -0.537 4.537 15 H 0.053 0.947 16 C 0.093 3.907 17 N -0.840 5.840 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.084 4.084 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.156 0.844 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.260 0.740 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 13.305 2.032 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.416 4.416 4 S 0.462 5.538 5 C -0.343 4.343 6 C 0.359 3.641 7 O -0.353 6.353 8 N -0.338 5.338 9 C -0.037 4.037 10 C -0.169 4.169 11 C -0.159 4.159 12 C 0.152 3.848 13 H 0.084 0.916 14 C -0.575 4.575 15 H 0.071 0.929 16 C -0.116 4.116 17 N -0.473 5.473 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.116 4.116 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.173 0.827 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.423 13.367 2.066 13.952 hybrid contribution -1.593 -1.092 -0.948 2.151 sum -5.016 12.275 1.118 13.307 Atomic orbital electron populations 1.20480 0.90303 1.02349 1.01913 1.18705 0.97297 0.91831 1.04788 1.25407 1.01466 1.02500 1.12271 1.83320 1.01760 1.00207 1.68530 1.25420 0.98767 0.96634 1.13513 1.16539 0.80755 0.87064 0.79730 1.90956 1.79940 1.17159 1.47250 1.49868 1.06227 1.06654 1.71010 1.22303 0.95363 0.86511 0.99480 1.22718 0.95540 0.99096 0.99595 1.22714 0.98943 0.94042 1.00155 1.19540 0.79678 0.86532 0.99083 0.91600 1.21114 1.38402 0.99618 0.98396 0.92911 1.24919 0.93504 0.97557 0.95650 1.69875 1.34274 1.15736 1.27418 0.86668 0.77716 0.79894 0.84379 1.19902 1.21081 1.20937 1.20571 0.91403 0.99541 1.00068 0.91586 0.92012 0.91573 0.82664 0.92337 0.92129 0.91488 0.91319 0.91619 0.91811 0.92982 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 10.13 36.01 0.36 -0.67 16 2 C -0.11 -1.67 5.78 -106.45 -0.62 -2.28 16 3 C -0.28 -3.83 10.67 29.18 0.31 -3.52 16 4 S 0.19 2.90 18.55 -107.50 -1.99 0.91 16 5 C -0.22 -4.41 6.37 -36.79 -0.23 -4.64 16 6 C 0.57 14.10 7.63 -12.89 -0.10 14.00 16 7 O -0.48 -13.87 14.35 5.19 0.07 -13.80 16 8 N -0.60 -13.88 3.07 -165.54 -0.51 -14.39 16 9 C 0.09 1.58 5.61 -2.53 -0.01 1.56 16 10 C -0.13 -2.09 7.09 -24.59 -0.17 -2.26 16 11 C -0.12 -2.35 6.45 -24.90 -0.16 -2.51 16 12 C 0.25 6.22 3.03 -67.85 -0.21 6.01 16 13 H 0.07 1.87 7.26 -51.93 -0.38 1.49 16 14 C -0.54 -15.02 8.07 -34.44 -0.28 -15.30 16 15 H 0.05 1.47 7.70 -52.49 -0.40 1.07 16 16 C 0.09 2.69 4.60 -17.82 -0.08 2.60 16 17 N -0.84 -25.32 11.26 55.43 0.62 -24.69 16 18 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 22 C -0.08 -1.51 9.80 -40.43 -0.40 -1.91 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.06 0.93 4.90 -27.98 -0.14 0.79 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.28 7.76 -51.93 -0.40 0.87 16 32 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.15 2.71 8.06 -52.49 -0.42 2.28 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -32.65 292.32 -8.26 -40.91 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.26 Total: -1.81 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.58 Total: -8.91 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.12 Total: -39.08 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.07 Total: -13.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.99 Total: 0.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.65 -8.26 -40.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.659 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds