Wall clock time and date at job start Mon Mar 30 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33813 * 122.45064 * 2 1 4 4 S 1.70614 * 110.95673 * 179.74060 * 3 2 1 5 5 C 1.75832 * 91.56233 * 0.30731 * 4 3 2 6 6 C 1.46580 * 125.45983 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00354 * 186.26186 * 6 5 4 8 8 N 1.34782 * 119.99955 * 6.25860 * 6 5 4 9 9 C 1.47423 * 125.64824 * 356.39662 * 8 6 5 10 10 C 1.54907 * 104.82916 * 155.91290 * 9 8 6 11 11 C 1.55153 * 101.58242 * 37.01029 * 10 9 8 12 12 C 1.47485 * 125.58979 * 176.42247 * 8 6 5 13 13 H 1.08998 * 109.96517 * 300.32367 * 12 8 6 14 14 C 1.50702 * 110.03437 * 61.64331 * 12 8 6 15 15 H 1.07997 * 119.99853 * 82.31482 * 14 12 8 16 16 C 1.37875 * 119.99688 * 262.31222 * 14 12 8 17 17 N 1.31510 * 120.00416 * 356.76034 * 16 14 12 18 18 Si 1.86804 * 119.99663 * 176.75941 * 16 14 12 19 19 H 1.48500 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47415 * 120.00127 * 18 16 14 21 21 H 1.48496 * 109.46963 * 240.00131 * 18 16 14 22 22 C 1.36655 * 109.08233 * 359.69419 * 5 4 3 23 23 H 1.09002 * 109.47126 * 270.02527 * 1 2 3 24 24 H 1.08996 * 109.47048 * 30.02459 * 1 2 3 25 25 H 1.09000 * 109.47138 * 150.02304 * 1 2 3 26 26 H 1.07999 * 124.52331 * 359.97438 * 3 2 1 27 27 H 1.09000 * 110.36660 * 37.07252 * 9 8 6 28 28 H 1.08994 * 110.36617 * 274.75144 * 9 8 6 29 29 H 1.09003 * 111.00264 * 278.93153 * 10 9 8 30 30 H 1.09000 * 110.99905 * 155.08564 * 10 9 8 31 31 H 1.09001 * 110.71853 * 82.86282 * 11 10 9 32 32 H 1.09009 * 110.71731 * 205.95511 * 11 10 9 33 33 H 0.97000 * 119.99830 * 180.02562 * 17 16 14 34 34 H 1.07996 * 123.34951 * 180.20556 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0072 5 6 3.5937 -0.9427 0.0008 6 6 4.6231 -1.9863 0.0024 7 8 4.3052 -3.1549 -0.1174 8 7 5.9218 -1.6516 0.1364 9 6 6.4515 -0.2780 0.2142 10 6 7.8029 -0.4157 0.9587 11 6 8.3322 -1.7617 0.3971 12 6 7.0475 -2.6000 0.2288 13 1 6.9148 -3.2521 1.0920 14 6 7.1339 -3.4231 -1.0306 15 1 7.6298 -3.0244 -1.9032 16 6 6.5798 -4.6850 -1.0687 17 7 6.0322 -5.1957 0.0124 18 14 6.6069 -5.6694 -2.6561 19 1 7.2749 -4.8762 -3.7190 20 1 7.3519 -6.9358 -2.4407 21 1 5.2149 -5.9784 -3.0707 22 6 2.2446 -1.1601 0.0005 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8026 2.1231 -0.0004 27 1 5.7708 0.3597 0.7782 28 1 6.6089 0.1251 -0.7862 29 1 7.6509 -0.4748 2.0365 30 1 8.4741 0.4046 0.7048 31 1 8.8236 -1.6118 -0.5642 32 1 9.0114 -2.2350 1.1062 33 1 5.6427 -6.0837 -0.0144 34 1 1.8019 -2.1452 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:10 Heat of formation + Delta-G solvation = -18.482196 kcal Electronic energy + Delta-G solvation = -18123.010639 eV Core-core repulsion = 15339.736766 eV Total energy + Delta-G solvation = -2783.273873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59939 -39.14709 -37.69434 -34.68061 -32.66916 -31.40279 -30.29459 -28.53745 -26.49340 -25.66718 -23.30546 -21.73455 -20.51378 -19.79227 -18.87457 -18.29472 -17.10810 -16.78064 -16.44002 -15.97723 -15.33329 -14.95617 -14.59562 -14.34502 -14.11826 -13.94342 -13.70785 -13.32609 -13.15805 -13.02565 -12.83139 -12.80519 -12.71672 -12.40249 -12.30208 -11.94448 -11.35551 -11.27632 -11.04116 -10.84297 -10.23944 -9.76582 -9.24822 -9.10730 -8.05583 -6.21574 -0.32268 0.61008 1.09004 1.31132 1.36065 1.44495 1.51787 2.37815 2.45954 2.57793 3.35380 3.81637 3.88318 4.10965 4.20793 4.24447 4.35201 4.47082 4.62503 4.72244 4.74447 4.85928 4.89231 5.01313 5.08476 5.11140 5.26516 5.31332 5.46204 5.55688 5.61114 5.77409 6.05466 6.28045 6.80483 7.13943 7.49843 7.70070 8.97459 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.007541 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.866813 B = 3712.105582 C = 4719.355830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.128 4.128 3 C -0.255 4.255 4 S 0.255 5.745 5 C -0.282 4.282 6 C 0.561 3.439 7 O -0.547 6.547 8 N -0.610 5.610 9 C 0.083 3.917 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.242 3.758 13 H 0.017 0.983 14 C -0.549 4.549 15 H 0.049 0.951 16 C 0.041 3.959 17 N -0.876 5.876 18 Si 0.940 3.060 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.297 1.297 22 C -0.082 4.082 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.199 0.801 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 17.424 1.703 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C -0.391 4.391 4 S 0.524 5.476 5 C -0.402 4.402 6 C 0.348 3.652 7 O -0.426 6.426 8 N -0.344 5.344 9 C -0.041 4.041 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.143 3.857 13 H 0.035 0.965 14 C -0.587 4.587 15 H 0.067 0.933 16 C -0.164 4.164 17 N -0.511 5.511 18 Si 0.767 3.233 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.224 1.224 22 C -0.116 4.116 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.216 0.784 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.483 17.546 1.734 17.972 hybrid contribution -1.618 -2.220 -0.814 2.865 sum -5.101 15.326 0.920 16.178 Atomic orbital electron populations 1.20544 0.87702 1.03479 1.03062 1.18898 0.99148 0.90686 1.05330 1.25923 1.00624 1.03960 1.08643 1.82804 1.02555 0.95053 1.67143 1.24980 0.98000 0.99172 1.18074 1.17242 0.81896 0.87528 0.78493 1.90899 1.81217 1.20216 1.50257 1.49603 1.05656 1.08845 1.70302 1.22636 0.96688 0.83775 1.01016 1.22746 0.94755 0.98064 0.99760 1.22579 0.96211 0.95496 1.01007 1.19417 0.82802 0.87634 0.95884 0.96468 1.21437 1.37866 1.00131 0.99302 0.93270 1.25648 0.93571 0.98961 0.98237 1.70033 1.36070 1.15740 1.29264 0.85806 0.76952 0.79251 0.81336 1.18689 1.19646 1.22381 1.20731 0.91466 1.00265 0.99183 0.90386 0.89470 0.91936 0.78408 0.90038 0.90837 0.90550 0.86701 0.91300 0.90971 0.93731 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 10.13 71.24 0.72 -1.02 16 2 C -0.13 -3.48 5.78 -21.05 -0.12 -3.60 16 3 C -0.25 -5.81 10.67 66.81 0.71 -5.10 16 4 S 0.26 6.82 18.55 -56.49 -1.05 5.77 16 5 C -0.28 -11.25 6.37 24.08 0.15 -11.10 16 6 C 0.56 28.84 7.63 86.42 0.66 29.50 16 7 O -0.55 -34.11 14.35 -4.35 -0.06 -34.17 16 8 N -0.61 -28.70 3.07 -795.86 -2.45 -31.15 16 9 C 0.08 2.74 5.61 86.85 0.49 3.22 16 10 C -0.12 -3.28 7.09 31.98 0.23 -3.06 16 11 C -0.11 -4.36 6.45 31.78 0.21 -4.16 16 12 C 0.24 12.51 3.03 44.51 0.14 12.65 16 13 H 0.02 1.05 7.26 -2.39 -0.02 1.03 16 14 C -0.55 -31.88 8.07 25.60 0.21 -31.67 16 15 H 0.05 2.81 7.70 -2.91 -0.02 2.78 16 16 C 0.04 2.48 4.60 84.65 0.39 2.86 16 17 N -0.88 -56.34 11.26 21.45 0.24 -56.10 16 18 Si 0.94 47.92 29.54 68.60 2.03 49.94 16 19 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 22 C -0.08 -3.02 9.80 21.72 0.21 -2.80 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 1.27 8.12 -2.39 -0.02 1.26 16 25 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 26 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.08 2.31 4.90 -17.62 -0.09 2.23 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.57 7.76 -2.39 -0.02 2.55 16 32 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.13 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -78.58 292.32 3.72 -74.86 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.02 Total: 5.13 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 3.99 Total: -14.28 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -2.20 Total: -87.25 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.06 Total: -34.17 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -1.05 Total: 5.77 kcal Total: -78.58 3.72 -74.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.374 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds