Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 S 1.70990 * 125.55171 * 269.69728 * 3 2 1 5 5 C 1.75917 * 90.77323 * 179.97438 * 4 3 2 6 6 C 1.47115 * 125.07000 * 180.02562 * 5 4 3 7 7 N 1.31501 * 126.40036 * 359.94157 * 6 5 4 8 8 N 1.28661 * 109.20203 * 179.86106 * 7 6 5 9 9 C 1.30565 * 109.53010 * 0.40840 * 8 7 6 10 10 C 1.50704 * 126.15935 * 179.72656 * 9 8 7 11 11 O 1.34309 * 107.67611 * 359.75287 * 9 8 7 12 12 N 1.30074 * 109.85680 * 0.29297 * 5 4 3 13 13 C 1.32577 * 115.99770 * 359.77973 * 12 5 4 14 14 C 1.41183 * 122.76513 * 180.02562 * 13 12 5 15 15 H 1.07991 * 120.00441 * 179.97438 * 14 13 12 16 16 C 1.39633 * 119.99724 * 359.95394 * 14 13 12 17 17 N 1.31057 * 119.99798 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46763 * 90.00132 * 18 16 14 20 20 H 1.48498 * 109.47106 * 209.99954 * 18 16 14 21 21 H 1.48491 * 109.46792 * 329.99958 * 18 16 14 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 1.09002 * 109.47148 * 270.02251 * 10 9 8 28 28 H 1.08992 * 109.47238 * 30.03144 * 10 9 8 29 29 H 1.09006 * 109.46646 * 150.03164 * 10 9 8 30 30 H 0.97004 * 119.99887 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.3707 2.3557 -1.3911 5 6 2.8466 3.7200 -0.3877 6 6 3.3087 5.0216 -0.8945 7 7 3.4383 5.3660 -2.1570 8 7 3.8631 6.5787 -2.2233 9 6 4.0285 7.0498 -1.0169 10 6 4.5182 8.4298 -0.6606 11 8 3.6842 6.0828 -0.1507 12 7 2.7344 3.4045 0.8692 13 6 2.3001 2.1780 1.1239 14 6 2.1250 1.6865 2.4357 15 1 1.7679 0.6794 2.5919 16 6 2.4140 2.5026 3.5313 17 7 2.8472 3.7248 3.3418 18 14 2.1830 1.8521 5.2672 19 1 3.4415 1.2121 5.7274 20 1 1.8383 2.9755 6.1750 21 1 1.0858 0.8517 5.2789 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.6046 8.4186 -0.5736 28 1 4.2232 9.1324 -1.4399 29 1 4.0807 8.7364 0.2896 30 1 3.0476 4.2919 4.1029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = 44.328230 kcal Electronic energy + Delta-G solvation = -17224.881887 eV Core-core repulsion = 14340.791335 eV Total energy + Delta-G solvation = -2884.090552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.21586 -40.05402 -37.28712 -35.46836 -34.81267 -33.85587 -30.92761 -29.28239 -27.53193 -26.21286 -23.79994 -23.74807 -22.97936 -21.16871 -18.97652 -18.55442 -18.13070 -17.46645 -17.19030 -16.25175 -15.64908 -15.24066 -14.90176 -14.72442 -14.34540 -13.99736 -13.61808 -13.58199 -13.43200 -13.11716 -13.05261 -12.92211 -12.68095 -12.38276 -12.24173 -12.09156 -11.95103 -11.38706 -11.28247 -10.80521 -10.22972 -9.85200 -9.25386 -8.46222 -6.39382 -0.68820 0.32106 0.53693 1.19875 1.37236 1.44908 1.46478 1.54062 1.57097 2.22970 2.31893 2.54257 3.24205 3.41663 3.96129 4.14964 4.32464 4.39321 4.40329 4.56487 4.63127 4.69618 4.72537 4.94365 5.03661 5.15807 5.24116 5.35160 5.47625 5.56354 6.14476 6.48878 6.84503 7.06737 7.45574 8.44056 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.007529 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.039199 B = 3718.119334 C = 5225.617706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.009 4.009 3 C -0.391 4.391 4 S 0.162 5.838 5 C 0.033 3.967 6 C 0.248 3.752 7 N -0.286 5.286 8 N -0.312 5.312 9 C 0.165 3.835 10 C -0.054 4.054 11 O -0.218 6.218 12 N -0.400 5.400 13 C 0.187 3.813 14 C -0.455 4.455 15 H 0.099 0.901 16 C 0.023 3.977 17 N -0.794 5.794 18 Si 0.987 3.013 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.251 1.251 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 2.969 -2.864 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 C -0.515 4.515 4 S 0.414 5.586 5 C -0.241 4.241 6 C 0.037 3.963 7 N -0.137 5.137 8 N -0.160 5.160 9 C -0.045 4.045 10 C -0.111 4.111 11 O -0.097 6.097 12 N -0.120 5.120 13 C 0.061 3.939 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.195 4.195 17 N -0.419 5.419 18 Si 0.807 3.193 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.174 1.174 22 H 0.095 0.905 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.127 0.873 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.752 3.391 -4.732 5.870 hybrid contribution -0.058 -0.232 2.911 2.921 sum 0.694 3.159 -1.821 3.712 Atomic orbital electron populations 1.21699 0.94826 1.01766 1.01014 1.19517 0.95638 0.88118 1.01614 1.25451 1.26800 1.05103 0.94159 1.82393 1.63197 1.03646 1.09375 1.23681 1.12441 0.94339 0.93672 1.24091 0.98901 0.87903 0.85419 1.74775 1.17294 1.06889 1.14760 1.74318 1.17682 1.02535 1.21433 1.29372 0.96784 0.95344 0.83044 1.20791 1.03777 0.80534 1.06005 1.85016 1.63099 1.21402 1.40144 1.67512 1.12053 1.18623 1.13796 1.18123 0.94858 0.85399 0.95541 1.19272 1.40701 1.00757 0.88224 0.88318 1.26918 0.92448 0.94462 1.05648 1.70246 1.30355 1.07499 1.33757 0.85125 0.79837 0.78790 0.75520 1.18881 1.19871 1.17440 0.90487 0.94274 0.93397 0.91215 0.91384 0.85908 0.85069 0.87331 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.89 71.98 0.71 -3.69 16 2 C -0.01 -0.32 6.05 29.85 0.18 -0.14 16 3 C -0.39 -17.98 5.74 25.66 0.15 -17.83 16 4 S 0.16 6.99 23.12 -56.49 -1.31 5.69 16 5 C 0.03 1.65 7.44 87.28 0.65 2.30 16 6 C 0.25 11.54 8.32 87.07 0.72 12.27 16 7 N -0.29 -12.44 12.29 -166.45 -2.05 -14.49 16 8 N -0.31 -11.84 12.23 -165.26 -2.02 -13.86 16 9 C 0.17 5.48 8.47 88.30 0.75 6.22 16 10 C -0.05 -0.94 10.51 71.24 0.75 -0.19 16 11 O -0.22 -9.43 10.89 -8.78 -0.10 -9.52 16 12 N -0.40 -22.39 8.46 -183.38 -1.55 -23.94 16 13 C 0.19 10.08 6.46 39.73 0.26 10.33 16 14 C -0.46 -23.96 8.90 23.33 0.21 -23.75 16 15 H 0.10 4.80 6.76 -2.92 -0.02 4.78 16 16 C 0.02 1.19 5.49 85.15 0.47 1.66 16 17 N -0.79 -43.49 11.69 21.78 0.25 -43.24 16 18 Si 0.99 38.19 29.56 68.60 2.03 40.21 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 22 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.07 2.54 7.08 -2.39 -0.02 2.52 16 27 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.13 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.28 13.92 8.30 -92.71 -0.77 13.16 16 Total: -1.00 -68.21 285.96 1.28 -66.93 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.18 Total: 5.05 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.84 Total: -12.83 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -5.36 Total: -95.53 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.10 Total: -9.52 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.31 Total: 5.69 kcal Total: -68.21 1.28 -66.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.253 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds