Wall clock time and date at job start Mon Mar 30 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.88743 * 297.56581 * 9 7 2 11 11 C 1.55154 * 111.00888 * 61.45274 * 9 7 2 12 12 C 1.54326 * 102.94245 * 153.57417 * 11 9 7 13 13 N 1.47021 * 107.27174 * 337.80639 * 12 11 9 14 14 C 1.34773 * 125.64618 * 178.91540 * 13 12 11 15 15 O 1.21288 * 119.99940 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00166 * 0.02833 * 14 13 12 17 17 C 1.50699 * 109.47239 * 179.97438 * 16 14 13 18 18 C 1.33398 * 125.20347 * 90.00030 * 17 16 14 19 19 C 1.38417 * 114.92183 * 179.97438 * 18 17 16 20 20 C 1.33393 * 114.92522 * 359.97438 * 19 18 17 21 21 S 1.75888 * 109.59126 * 359.76434 * 20 19 18 22 22 C 1.47419 * 108.70418 * 358.94141 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.72077 * 271.93420 * 11 9 7 25 25 H 1.08996 * 110.72047 * 35.03271 * 11 9 7 26 26 H 1.09005 * 109.87871 * 97.22652 * 12 11 9 27 27 H 1.09002 * 109.88475 * 218.38534 * 12 11 9 28 28 H 1.08998 * 109.47534 * 299.99832 * 16 14 13 29 29 H 1.09001 * 109.47292 * 59.99948 * 16 14 13 30 30 H 1.08001 * 122.53308 * 0.02562 * 18 17 16 31 31 H 1.08002 * 122.54092 * 179.97438 * 19 18 17 32 32 H 1.07996 * 125.20546 * 180.02562 * 20 19 18 33 33 H 1.08998 * 110.36829 * 265.29389 * 22 13 12 34 34 H 1.09001 * 110.36863 * 142.96491 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.9005 -0.7222 -0.9023 11 6 4.0673 -0.5027 1.2730 12 6 5.4485 -1.1674 1.4523 13 7 5.4084 -2.4552 0.7443 14 6 6.4293 -3.3296 0.6459 15 8 6.2829 -4.3664 0.0338 16 6 7.7526 -3.0191 1.2965 17 6 8.7160 -4.1492 1.0400 18 6 9.5413 -4.2341 -0.0046 19 6 10.3367 -5.3667 -0.0290 20 6 10.1577 -6.2015 0.9959 21 16 8.9302 -5.5541 2.0765 22 6 4.0668 -2.6315 0.1593 23 1 -0.4850 0.8401 0.0004 24 1 4.1734 0.5703 1.1140 25 1 3.4259 -0.7024 2.1314 26 1 6.2238 -0.5324 1.0233 27 1 5.6458 -1.3326 2.5115 28 1 8.1552 -2.0963 0.8789 29 1 7.6104 -2.9001 2.3706 30 1 9.5861 -3.4760 -0.7725 31 1 11.0483 -5.5599 -0.8181 32 1 10.6886 -7.1305 1.1422 33 1 3.4331 -3.2106 0.8310 34 1 4.1378 -3.1205 -0.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:44 Heat of formation + Delta-G solvation = 0.285171 kcal Electronic energy + Delta-G solvation = -17372.835935 eV Core-core repulsion = 14590.375877 eV Total energy + Delta-G solvation = -2782.460059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71162 -37.88214 -36.84829 -33.10578 -32.24207 -30.81298 -28.70968 -27.30984 -25.00145 -23.27963 -22.33408 -19.97562 -19.38189 -18.95259 -17.13435 -17.01487 -16.76100 -15.64961 -15.43920 -14.83765 -14.40618 -14.14134 -13.26063 -13.02970 -12.87262 -12.73848 -12.73162 -12.43961 -12.25133 -12.05107 -11.63650 -11.54160 -10.96757 -10.80960 -10.79288 -10.21986 -10.03517 -9.68414 -9.59456 -9.20076 -8.68216 -8.66361 -8.47953 -8.19224 -6.17411 -4.18603 0.94048 1.59558 1.96199 2.68908 2.89589 3.18664 3.28349 3.30462 3.44218 4.31249 4.58091 4.82447 4.97691 5.04787 5.12588 5.27594 5.32081 5.49793 5.51478 5.54707 5.65636 5.91019 6.05421 6.08066 6.22880 6.38214 6.43044 6.50517 6.59938 6.67953 6.84469 7.30922 7.60401 7.92275 8.39452 8.46568 8.85708 9.43186 10.95484 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.050480 B = 0.004020 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.545303 B = 6963.871964 C = 7113.917730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.292 1.292 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.010 3.990 10 H 0.041 0.959 11 C -0.143 4.143 12 C 0.100 3.900 13 N -0.615 5.615 14 C 0.523 3.477 15 O -0.539 6.539 16 C -0.069 4.069 17 C -0.149 4.149 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.219 4.219 21 S 0.105 5.895 22 C 0.120 3.880 23 H 0.266 0.734 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.067 0.933 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.917 -4.786 4.624 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.219 1.219 7 C -0.552 4.552 8 H 0.096 0.904 9 C -0.010 4.010 10 H 0.059 0.941 11 C -0.181 4.181 12 C -0.023 4.023 13 N -0.348 5.348 14 C 0.310 3.690 15 O -0.416 6.416 16 C -0.110 4.110 17 C -0.267 4.267 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.355 4.355 21 S 0.368 5.632 22 C -0.001 4.001 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.085 0.915 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.089 -5.786 5.655 20.732 hybrid contribution 0.981 1.490 -1.267 2.188 sum 20.069 -4.297 4.388 20.988 Atomic orbital electron populations 1.69890 1.06292 1.27131 1.50049 1.24965 0.94666 0.98976 0.94215 0.86915 0.80024 0.83675 0.78426 1.20162 1.19013 1.21933 1.20808 0.87793 0.94861 1.51703 0.90405 1.20351 0.97085 0.90447 0.93121 0.94111 1.23128 0.93605 0.98915 1.02450 1.22112 0.99916 0.84566 0.95754 1.48721 1.13172 1.19621 1.53336 1.19976 0.84469 0.83396 0.81189 1.90709 1.82947 1.25144 1.42824 1.20164 0.91551 0.96594 1.02731 1.23840 1.02580 0.99966 1.00317 1.20060 0.97784 0.99825 0.98620 1.20105 1.01858 0.94636 0.99618 1.25558 1.04547 1.04973 1.00378 1.84191 1.36869 1.15989 1.26109 1.22402 0.80157 0.99748 0.97840 0.92454 0.91948 0.90108 0.92210 0.92096 0.87231 0.88052 0.84490 0.84440 0.82078 0.91460 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.88 20.40 24.53 -169.99 -4.17 16.23 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -5.83 6.48 56.52 0.37 -5.47 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -13.72 9.13 -34.44 -0.31 -14.04 16 8 H 0.08 2.27 8.03 -52.49 -0.42 1.85 16 9 C 0.01 0.21 2.41 -89.62 -0.22 0.00 16 10 H 0.04 0.93 7.42 -51.93 -0.39 0.54 16 11 C -0.14 -2.71 5.09 -24.90 -0.13 -2.84 16 12 C 0.10 1.52 6.49 -3.06 -0.02 1.50 16 13 N -0.61 -10.83 3.33 -170.52 -0.57 -11.40 16 14 C 0.52 8.92 7.84 -10.99 -0.09 8.83 16 15 O -0.54 -11.18 16.29 5.55 0.09 -11.09 16 16 C -0.07 -0.85 5.39 -29.04 -0.16 -1.01 16 17 C -0.15 -1.94 5.00 -36.00 -0.18 -2.12 16 18 C -0.13 -1.62 10.05 -41.21 -0.41 -2.04 16 19 C -0.13 -1.43 10.18 -41.21 -0.42 -1.85 16 20 C -0.22 -2.32 11.23 29.04 0.33 -2.00 16 21 S 0.10 1.26 23.33 -107.50 -2.51 -1.25 16 22 C 0.12 2.46 6.35 -2.53 -0.02 2.44 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.06 1.17 5.14 -51.93 -0.27 0.90 16 25 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 34 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -31.29 296.47 -8.09 -39.38 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.45 Total: 0.52 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.72 Total: -11.18 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.21 Total: -37.07 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.17 Total: 16.23 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.29 -8.09 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.663 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds