Wall clock time and date at job start Mon Mar 30 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.88743 * 297.56581 * 9 7 2 11 11 C 1.55154 * 111.00888 * 61.45274 * 9 7 2 12 12 C 1.54326 * 102.94245 * 153.57417 * 11 9 7 13 13 N 1.47021 * 107.27174 * 337.80639 * 12 11 9 14 14 C 1.34773 * 125.64618 * 178.91540 * 13 12 11 15 15 O 1.21288 * 119.99940 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00166 * 0.02833 * 14 13 12 17 17 C 1.50699 * 109.47239 * 179.97438 * 16 14 13 18 18 C 1.33398 * 125.20347 * 90.00030 * 17 16 14 19 19 C 1.38417 * 114.92183 * 179.97438 * 18 17 16 20 20 C 1.33393 * 114.92522 * 359.97438 * 19 18 17 21 21 S 1.75888 * 109.59126 * 359.76434 * 20 19 18 22 22 C 1.47419 * 108.70418 * 358.94141 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.72077 * 271.93420 * 11 9 7 25 25 H 1.08996 * 110.72047 * 35.03271 * 11 9 7 26 26 H 1.09005 * 109.87871 * 97.22652 * 12 11 9 27 27 H 1.09002 * 109.88475 * 218.38534 * 12 11 9 28 28 H 1.08998 * 109.47534 * 299.99832 * 16 14 13 29 29 H 1.09001 * 109.47292 * 59.99948 * 16 14 13 30 30 H 1.08001 * 122.53308 * 0.02562 * 18 17 16 31 31 H 1.08002 * 122.54092 * 179.97438 * 19 18 17 32 32 H 1.07996 * 125.20546 * 180.02562 * 20 19 18 33 33 H 1.08998 * 110.36829 * 265.29389 * 22 13 12 34 34 H 1.09001 * 110.36863 * 142.96491 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.9005 -0.7222 -0.9023 11 6 4.0673 -0.5027 1.2730 12 6 5.4485 -1.1674 1.4523 13 7 5.4084 -2.4552 0.7443 14 6 6.4293 -3.3296 0.6459 15 8 6.2829 -4.3664 0.0338 16 6 7.7526 -3.0191 1.2965 17 6 8.7160 -4.1492 1.0400 18 6 9.5413 -4.2341 -0.0046 19 6 10.3367 -5.3667 -0.0290 20 6 10.1577 -6.2015 0.9959 21 16 8.9302 -5.5541 2.0765 22 6 4.0668 -2.6315 0.1593 23 1 -0.4850 0.8401 0.0004 24 1 4.1734 0.5703 1.1140 25 1 3.4259 -0.7024 2.1314 26 1 6.2238 -0.5324 1.0233 27 1 5.6458 -1.3326 2.5115 28 1 8.1552 -2.0963 0.8789 29 1 7.6104 -2.9001 2.3706 30 1 9.5861 -3.4760 -0.7725 31 1 11.0483 -5.5599 -0.8181 32 1 10.6886 -7.1305 1.1422 33 1 3.4331 -3.2106 0.8310 34 1 4.1378 -3.1205 -0.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260068846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:44 Heat of formation + Delta-G solvation = -19.726427 kcal Electronic energy + Delta-G solvation = -17373.703703 eV Core-core repulsion = 14590.375877 eV Total energy + Delta-G solvation = -2783.327827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06693 -38.94787 -38.16487 -34.98076 -33.44842 -32.35943 -30.19064 -28.43149 -26.64625 -24.39530 -23.63029 -21.66039 -20.52953 -20.04042 -18.87894 -18.15728 -18.04791 -16.94572 -16.59793 -16.28467 -15.99452 -15.51662 -14.85103 -14.38751 -14.21128 -13.93140 -13.77661 -13.64394 -13.40573 -13.26449 -13.13049 -12.77799 -12.53425 -12.45264 -11.95660 -11.66890 -11.64633 -11.46650 -11.16374 -10.97636 -10.72182 -9.61100 -9.57073 -9.35454 -8.29292 -6.36598 0.06945 0.74717 1.11739 1.36185 1.42120 1.51936 1.61247 1.79510 2.16499 2.36261 3.05281 3.56308 3.73539 3.88103 4.14009 4.16869 4.25302 4.29602 4.43221 4.49165 4.62740 4.69424 4.73436 4.77875 4.90724 5.13332 5.13900 5.21968 5.25439 5.39377 5.53987 5.60649 5.66550 6.25514 6.60944 6.69047 7.14061 7.29531 8.87529 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.050480 B = 0.004020 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.545303 B = 6963.871964 C = 7113.917730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.240 1.240 6 H -0.299 1.299 7 C -0.522 4.522 8 H 0.029 0.971 9 C 0.007 3.993 10 H 0.041 0.959 11 C -0.141 4.141 12 C 0.103 3.897 13 N -0.617 5.617 14 C 0.519 3.481 15 O -0.584 6.584 16 C -0.057 4.057 17 C -0.174 4.174 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.214 4.214 21 S 0.080 5.920 22 C 0.127 3.873 23 H 0.267 0.733 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.048 0.952 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.540 -3.189 5.432 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.176 1.176 5 H -0.163 1.163 6 H -0.227 1.227 7 C -0.561 4.561 8 H 0.047 0.953 9 C -0.013 4.013 10 H 0.059 0.941 11 C -0.179 4.179 12 C -0.018 4.018 13 N -0.350 5.350 14 C 0.309 3.691 15 O -0.465 6.465 16 C -0.098 4.098 17 C -0.291 4.291 18 C -0.169 4.169 19 C -0.173 4.173 20 C -0.349 4.349 21 S 0.343 5.657 22 C 0.004 3.996 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.159 0.841 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.179 0.821 32 H 0.204 0.796 33 H 0.066 0.934 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.750 -4.192 6.488 24.025 hybrid contribution -0.202 0.827 -1.575 1.790 sum 22.548 -3.365 4.913 23.321 Atomic orbital electron populations 1.70063 1.08560 1.28324 1.52055 1.25934 0.95438 1.03386 0.93622 0.85824 0.79262 0.77724 0.79845 1.17629 1.16346 1.22685 1.21052 0.90589 0.93180 1.51232 0.95271 1.20203 0.93918 0.92088 0.95071 0.94117 1.22996 0.95628 0.99596 0.99653 1.22283 0.98288 0.83301 0.97956 1.48761 1.11894 1.20942 1.53427 1.20875 0.85558 0.82323 0.80341 1.90688 1.83842 1.27086 1.44865 1.20198 0.88258 0.97611 1.03768 1.24019 1.03456 1.00545 1.01097 1.20390 0.97577 1.00456 0.98471 1.20425 1.02257 0.94291 1.00370 1.25920 1.03719 1.05693 0.99605 1.84241 1.37903 1.16546 1.26962 1.22016 0.82186 0.98516 0.96876 0.92386 0.90712 0.91226 0.88491 0.88603 0.84134 0.85631 0.83422 0.82094 0.79625 0.93380 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.95 41.13 24.53 68.60 1.68 42.81 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.24 -9.35 6.48 99.48 0.64 -8.71 16 6 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.52 -28.99 9.13 25.60 0.23 -28.76 16 8 H 0.03 1.83 8.03 -2.91 -0.02 1.81 16 9 C 0.01 0.30 2.41 -10.15 -0.02 0.27 16 10 H 0.04 1.80 7.42 -2.39 -0.02 1.78 16 11 C -0.14 -4.93 5.09 31.78 0.16 -4.76 16 12 C 0.10 2.68 6.49 86.73 0.56 3.24 16 13 N -0.62 -20.44 3.33 -811.78 -2.70 -23.14 16 14 C 0.52 16.69 7.84 87.66 0.69 17.38 16 15 O -0.58 -24.10 16.29 -3.05 -0.05 -24.15 16 16 C -0.06 -1.22 5.39 29.10 0.16 -1.06 16 17 C -0.17 -4.09 5.00 24.59 0.12 -3.97 16 18 C -0.14 -3.04 10.05 21.22 0.21 -2.82 16 19 C -0.14 -2.76 10.18 21.22 0.22 -2.54 16 20 C -0.21 -4.05 11.23 66.72 0.75 -3.30 16 21 S 0.08 1.79 23.33 -56.49 -1.32 0.47 16 22 C 0.13 5.29 6.35 86.86 0.55 5.84 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.07 2.45 5.14 -2.39 -0.01 2.43 16 25 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 26 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.05 2.15 8.03 -2.39 -0.02 2.13 16 34 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -72.01 296.47 3.04 -68.97 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.03 Total: 12.17 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.09 Total: -19.27 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.40 Total: -81.01 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.68 Total: 42.81 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.32 Total: 0.47 kcal Total: -72.01 3.04 -68.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.243 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds