Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48503 * 109.46983 * 89.95974 * 3 2 1 5 5 H 1.48500 * 109.47284 * 209.96068 * 3 2 1 6 6 H 1.48503 * 109.46946 * 329.96666 * 3 2 1 7 7 C 1.37880 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99793 * 4.24384 * 7 2 1 9 9 C 1.50702 * 120.00134 * 184.23755 * 7 2 1 10 10 H 1.09005 * 109.47003 * 24.72335 * 9 7 2 11 11 N 1.46499 * 109.47268 * 264.72079 * 9 7 2 12 12 C 1.34775 * 119.99892 * 154.99824 * 11 9 7 13 13 O 1.21286 * 120.00069 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00399 * 180.02562 * 12 11 9 15 15 C 1.52992 * 109.47670 * 180.02562 * 14 12 11 16 16 C 1.53006 * 117.49681 * 243.74823 * 15 14 12 17 17 C 1.53005 * 117.49962 * 175.08617 * 15 14 12 18 18 C 1.50700 * 109.47034 * 144.71835 * 9 7 2 19 19 C 1.33382 * 125.20594 * 254.52667 * 18 9 7 20 20 C 1.38428 * 114.92463 * 179.86240 * 19 18 9 21 21 C 1.33393 * 114.91699 * 0.42286 * 20 19 18 22 22 S 1.75889 * 109.59452 * 359.77844 * 21 20 19 23 23 H 0.96996 * 119.99857 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00032 * 335.00370 * 11 9 7 25 25 H 1.09002 * 109.46937 * 300.00224 * 14 12 11 26 26 H 1.09000 * 109.47023 * 59.99305 * 14 12 11 27 27 H 1.09001 * 115.55237 * 29.41544 * 15 14 12 28 28 H 1.08994 * 117.49907 * 359.97438 * 16 15 14 29 29 H 1.09000 * 117.50085 * 145.02194 * 16 15 14 30 30 H 1.08998 * 117.49626 * 214.97769 * 17 15 14 31 31 H 1.08995 * 117.49934 * 0.02562 * 17 15 14 32 32 H 1.08001 * 122.54142 * 0.02562 * 19 18 9 33 33 H 1.08001 * 122.54422 * 180.20214 * 20 19 18 34 34 H 1.07999 * 125.20292 * 179.74364 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4959 2.0468 1.4001 5 1 3.5472 1.4399 -0.6992 6 1 1.4470 2.6524 -0.7008 7 6 2.0046 -1.1941 -0.0005 8 1 1.4667 -2.1281 -0.0702 9 6 3.5085 -1.1959 0.0959 10 1 3.8425 -0.2796 0.5827 11 7 4.0840 -1.2721 -1.2492 12 6 5.3239 -0.7965 -1.4795 13 8 5.9629 -0.3050 -0.5734 14 6 5.9157 -0.8743 -2.8632 15 6 7.3214 -0.2705 -2.8514 16 6 7.5581 0.9848 -3.6936 17 6 8.1391 -0.3588 -4.1416 18 6 3.9586 -2.3863 0.9031 19 6 4.4098 -2.3387 2.1574 20 6 4.7636 -3.5634 2.6970 21 6 4.6080 -4.6045 1.8777 22 16 3.9765 -4.0500 0.3326 23 1 -0.4850 0.8400 -0.0004 24 1 3.5728 -1.6647 -1.9739 25 1 5.9712 -1.9168 -3.1765 26 1 5.2870 -0.3188 -3.5590 27 1 7.8603 -0.3522 -1.9074 28 1 6.7125 1.3801 -4.2563 29 1 8.2530 1.7287 -3.3039 30 1 9.2159 -0.4982 -4.0463 31 1 7.6755 -0.8467 -4.9989 32 1 4.4904 -1.4149 2.7111 33 1 5.1405 -3.6676 3.7037 34 1 4.8356 -5.6308 2.1250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = 10.335880 kcal Electronic energy + Delta-G solvation = -17659.293298 eV Core-core repulsion = 14877.269071 eV Total energy + Delta-G solvation = -2782.024227 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17546 -37.32622 -36.68053 -34.49699 -32.43302 -30.44299 -28.60090 -26.75581 -23.60669 -22.33290 -21.84019 -20.53869 -19.56111 -18.62617 -17.45494 -16.59621 -16.23138 -15.39661 -15.22333 -14.74374 -14.37223 -13.84428 -13.79579 -13.00006 -12.73697 -12.39566 -12.33376 -11.94124 -11.84513 -11.47967 -11.36863 -11.27078 -11.02989 -10.79048 -10.27105 -10.21444 -9.98162 -9.88043 -9.57361 -9.25277 -8.85014 -8.23557 -7.85843 -7.76998 -6.41891 -4.50312 1.74759 2.34617 2.74273 3.16921 3.25736 3.35926 3.39377 3.45780 3.84543 4.10773 4.19617 4.82668 4.96680 5.01575 5.15918 5.39355 5.56603 5.63498 5.68647 5.76306 5.81829 5.89189 5.99413 6.14444 6.18252 6.28962 6.45406 6.53867 6.79590 7.05136 7.10258 7.22562 7.51375 8.01958 8.54900 8.65069 9.05536 9.17834 10.67353 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.008846 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.668715 B = 3164.521095 C = 4678.184105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.091 3.909 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.253 1.253 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.085 0.915 9 C 0.293 3.707 10 H 0.071 0.929 11 N -0.716 5.716 12 C 0.503 3.497 13 O -0.555 6.555 14 C -0.116 4.116 15 C -0.133 4.133 16 C -0.181 4.181 17 C -0.184 4.184 18 C -0.103 4.103 19 C -0.174 4.174 20 C -0.120 4.120 21 C -0.251 4.251 22 S 0.081 5.919 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -3.812 -4.782 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.117 4.117 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.177 1.177 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.103 0.897 9 C 0.190 3.810 10 H 0.089 0.911 11 N -0.366 5.366 12 C 0.288 3.712 13 O -0.434 6.434 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.218 4.218 17 C -0.221 4.221 18 C -0.222 4.222 19 C -0.202 4.202 20 C -0.151 4.151 21 C -0.386 4.386 22 S 0.343 5.657 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.349 -4.073 -5.458 12.389 hybrid contribution 0.378 1.359 1.067 1.768 sum 10.727 -2.714 -4.392 11.905 Atomic orbital electron populations 1.69886 1.06438 1.27971 1.46161 1.25077 0.94751 0.99336 0.92581 0.86903 0.80970 0.82969 0.79545 1.19716 1.17692 1.21007 1.20985 0.87201 0.95444 1.52361 0.89704 1.17618 0.93569 0.90291 0.79480 0.91096 1.47645 1.15047 1.60473 1.13444 1.20612 0.82319 0.78182 0.90061 1.90610 1.60909 1.45717 1.46193 1.21291 0.95320 1.02573 0.96391 1.22065 0.96096 1.00957 0.96011 1.23017 1.03411 0.91321 1.04045 1.22989 0.99501 1.01125 0.98517 1.25366 1.00785 0.97371 0.98713 1.19952 1.05857 0.98697 0.95744 1.20037 1.02688 0.92053 1.00352 1.25348 1.12342 1.02391 0.98502 1.83907 1.64432 1.01929 1.15468 0.91847 0.77311 0.88976 0.89357 0.86511 0.88974 0.89032 0.89004 0.88949 0.85080 0.85386 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.53 13.96 55.43 0.77 -23.76 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 20.80 26.94 -169.99 -4.58 16.22 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.25 -6.11 6.94 56.52 0.39 -5.72 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.47 9.03 -34.44 -0.31 -13.78 16 8 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 9 C 0.29 6.78 1.89 -70.23 -0.13 6.64 16 10 H 0.07 1.79 5.03 -51.93 -0.26 1.53 16 11 N -0.72 -14.42 4.92 -56.07 -0.28 -14.70 16 12 C 0.50 9.83 7.79 -10.99 -0.09 9.74 16 13 O -0.56 -12.82 15.23 5.55 0.08 -12.73 16 14 C -0.12 -1.69 5.98 -27.89 -0.17 -1.85 16 15 C -0.13 -1.88 5.41 -90.62 -0.49 -2.37 16 16 C -0.18 -2.24 10.18 -26.68 -0.27 -2.51 16 17 C -0.18 -2.04 10.26 -26.69 -0.27 -2.31 16 18 C -0.10 -2.23 5.35 -36.01 -0.19 -2.42 16 19 C -0.17 -3.54 10.03 -41.21 -0.41 -3.96 16 20 C -0.12 -2.09 10.18 -41.21 -0.42 -2.51 16 21 C -0.25 -4.19 11.23 29.04 0.33 -3.86 16 22 S 0.08 1.48 23.17 -107.50 -2.49 -1.01 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.39 7.10 8.59 -40.82 -0.35 6.74 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.09 1.16 7.88 -51.93 -0.41 0.76 16 27 H 0.12 1.88 7.31 -51.93 -0.38 1.50 16 28 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -30.05 308.11 -8.72 -38.77 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.34 Total: 9.44 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.53 Total: -16.87 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.50 Total: -38.46 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.58 Total: 16.22 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.05 -8.72 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.102 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds