Wall clock time and date at job start Mon Mar 30 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47028 * 266.55958 * 3 2 1 5 5 H 1.48494 * 109.47261 * 26.55951 * 3 2 1 6 6 H 1.48498 * 109.46947 * 146.56278 * 3 2 1 7 7 C 1.37874 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00155 * 353.91011 * 7 2 1 9 9 C 1.50700 * 119.99999 * 173.91512 * 7 2 1 10 10 H 1.09001 * 109.47018 * 331.76177 * 9 7 2 11 11 N 1.46492 * 109.47234 * 91.76583 * 9 7 2 12 12 C 1.34778 * 120.00161 * 204.99598 * 11 9 7 13 13 O 1.21280 * 120.00079 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00114 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.46919 * 180.02562 * 14 12 11 16 16 C 1.52997 * 117.50096 * 243.75052 * 15 14 12 17 17 C 1.52996 * 117.49770 * 175.08888 * 15 14 12 18 18 C 1.50700 * 109.47006 * 211.76439 * 9 7 2 19 19 C 1.33389 * 125.20686 * 105.25547 * 18 9 7 20 20 C 1.38423 * 114.92717 * 179.97438 * 19 18 9 21 21 C 1.33388 * 114.91750 * 0.02562 * 20 19 18 22 22 S 1.75889 * 125.20261 * 284.95308 * 18 9 7 23 23 H 0.96998 * 120.00340 * 359.97438 * 1 2 3 24 24 H 0.97010 * 120.00254 * 24.99711 * 11 9 7 25 25 H 1.08991 * 109.47328 * 300.00377 * 14 12 11 26 26 H 1.08999 * 109.46699 * 60.01045 * 14 12 11 27 27 H 1.09001 * 115.54821 * 29.42095 * 15 14 12 28 28 H 1.09001 * 117.50008 * 359.97438 * 16 15 14 29 29 H 1.09001 * 117.50076 * 145.02275 * 16 15 14 30 30 H 1.09002 * 117.49981 * 214.98056 * 17 15 14 31 31 H 1.08996 * 117.50275 * 0.02562 * 17 15 14 32 32 H 1.08000 * 122.53395 * 359.97438 * 19 18 9 33 33 H 1.07997 * 122.54495 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.20319 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5693 2.0045 -1.3975 5 1 1.4121 2.6726 0.6260 6 1 3.5084 1.4623 0.7715 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0983 9 6 3.5051 -1.1975 -0.1389 10 1 3.8200 -0.3198 -0.7033 11 7 4.1182 -1.1686 1.1913 12 6 5.3612 -0.6723 1.3498 13 8 5.9720 -0.2491 0.3912 14 6 5.9917 -0.6420 2.7182 15 6 7.3926 -0.0345 2.6210 16 6 8.5786 -0.9330 2.9769 17 6 8.1571 0.1908 3.9269 18 6 3.9397 -2.4444 -0.8653 19 6 4.3516 -2.4917 -2.1331 20 6 4.7017 -3.7520 -2.5861 21 6 4.5736 -4.7283 -1.6863 22 16 3.9883 -4.0587 -0.1687 23 1 -0.4850 0.8400 0.0004 24 1 3.6296 -1.5068 1.9581 25 1 5.3794 -0.0373 3.3871 26 1 6.0620 -1.6574 3.1083 27 1 7.5347 0.6938 1.8225 28 1 8.3610 -1.9569 3.2808 29 1 9.5012 -0.7956 2.4129 30 1 8.8026 1.0670 3.9876 31 1 7.6624 -0.0942 4.8554 32 1 4.4077 -1.6132 -2.7587 33 1 5.0521 -3.9313 -3.5918 34 1 4.7989 -5.7698 -1.8614 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:17 Heat of formation + Delta-G solvation = 10.514959 kcal Electronic energy + Delta-G solvation = -17679.384245 eV Core-core repulsion = 14897.367783 eV Total energy + Delta-G solvation = -2782.016462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17857 -37.32902 -36.68506 -34.50192 -32.42604 -30.44227 -28.60038 -26.75171 -23.61123 -22.33707 -21.83727 -20.54171 -19.55736 -18.61534 -17.45116 -16.57555 -16.27332 -15.50428 -14.99924 -14.78252 -14.45606 -13.83453 -13.79653 -12.98294 -12.73000 -12.42345 -12.35941 -11.96128 -11.78284 -11.47563 -11.36616 -11.27938 -11.00166 -10.78707 -10.28040 -10.22667 -10.01218 -9.88377 -9.58674 -9.25756 -8.83860 -8.23068 -7.86199 -7.77197 -6.41721 -4.50027 1.74399 2.34221 2.74015 3.17476 3.25566 3.34846 3.40374 3.45789 3.84123 4.11382 4.19916 4.82189 4.96208 5.01882 5.15845 5.40235 5.56154 5.63046 5.67050 5.73494 5.85946 5.88083 5.99384 6.13986 6.17837 6.28267 6.45555 6.54371 6.79435 7.04960 7.10100 7.22716 7.51606 8.02262 8.55016 8.65605 9.05609 9.18028 10.67485 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.009051 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.874988 B = 3092.984838 C = 4654.137049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.091 3.909 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.294 3.706 10 H 0.070 0.930 11 N -0.716 5.716 12 C 0.503 3.497 13 O -0.556 6.556 14 C -0.116 4.116 15 C -0.133 4.133 16 C -0.179 4.179 17 C -0.185 4.185 18 C -0.103 4.103 19 C -0.173 4.173 20 C -0.120 4.120 21 C -0.250 4.250 22 S 0.081 5.919 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 -3.854 4.713 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.117 4.117 3 Si 0.699 3.301 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.561 4.561 8 H 0.103 0.897 9 C 0.192 3.808 10 H 0.088 0.912 11 N -0.367 5.367 12 C 0.289 3.711 13 O -0.435 6.435 14 C -0.156 4.156 15 C -0.152 4.152 16 C -0.216 4.216 17 C -0.222 4.222 18 C -0.222 4.222 19 C -0.201 4.201 20 C -0.151 4.151 21 C -0.386 4.386 22 S 0.343 5.657 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.134 0.866 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.689 -4.064 5.416 12.653 hybrid contribution 0.375 1.225 -1.105 1.692 sum 11.064 -2.838 4.312 12.209 Atomic orbital electron populations 1.69888 1.06464 1.27997 1.46063 1.25068 0.94727 0.99354 0.92582 0.86885 0.80733 0.82865 0.79659 1.19759 1.21112 1.17850 1.20984 0.87415 0.95497 1.52195 0.89708 1.17594 0.93165 0.89500 0.80585 0.91227 1.47691 1.14904 1.61741 1.12319 1.20611 0.82255 0.77825 0.90448 1.90607 1.62703 1.48123 1.42039 1.21295 0.95457 1.02288 0.96548 1.22063 0.91266 1.02927 0.98897 1.23003 0.99317 0.95813 1.03479 1.22991 1.04246 1.00645 0.94340 1.25326 1.01026 0.97904 0.97965 1.19956 1.05999 0.98193 0.96001 1.20036 1.02691 0.92345 1.00073 1.25349 1.12658 1.02642 0.97914 1.83905 1.65643 1.01630 1.14513 0.91842 0.77307 0.89032 0.89320 0.86563 0.88969 0.89049 0.89017 0.88945 0.85049 0.85381 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 13.96 55.43 0.77 -23.73 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 20.76 26.86 -169.99 -4.57 16.19 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.25 -6.03 6.97 56.52 0.39 -5.64 16 7 C -0.52 -13.49 9.02 -34.44 -0.31 -13.80 16 8 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 9 C 0.29 6.79 1.82 -70.24 -0.13 6.66 16 10 H 0.07 1.76 5.34 -51.93 -0.28 1.48 16 11 N -0.72 -14.44 4.77 -56.07 -0.27 -14.70 16 12 C 0.50 9.85 7.72 -10.98 -0.08 9.76 16 13 O -0.56 -12.81 15.23 5.56 0.08 -12.73 16 14 C -0.12 -1.70 5.98 -27.88 -0.17 -1.86 16 15 C -0.13 -1.89 5.41 -90.62 -0.49 -2.38 16 16 C -0.18 -2.15 10.18 -26.70 -0.27 -2.42 16 17 C -0.19 -2.06 10.25 -26.70 -0.27 -2.33 16 18 C -0.10 -2.22 5.35 -36.00 -0.19 -2.42 16 19 C -0.17 -3.52 10.03 -41.21 -0.41 -3.93 16 20 C -0.12 -2.10 10.18 -41.21 -0.42 -2.52 16 21 C -0.25 -4.19 11.23 29.04 0.33 -3.86 16 22 S 0.08 1.49 23.17 -107.50 -2.49 -1.00 16 23 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.39 7.11 8.59 -40.82 -0.35 6.76 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 27 H 0.12 1.90 7.31 -51.93 -0.38 1.53 16 28 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -29.95 308.08 -8.71 -38.66 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.36 Total: 9.44 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.52 Total: -16.77 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.51 Total: -38.43 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.57 Total: 16.19 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.49 Total: -1.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.95 -8.71 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.172 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds