Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47028 * 266.55958 * 3 2 1 5 5 H 1.48494 * 109.47261 * 26.55951 * 3 2 1 6 6 H 1.48498 * 109.46947 * 146.56278 * 3 2 1 7 7 C 1.37874 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00155 * 353.91011 * 7 2 1 9 9 C 1.50700 * 119.99999 * 173.91512 * 7 2 1 10 10 H 1.09001 * 109.47018 * 331.76177 * 9 7 2 11 11 N 1.46492 * 109.47234 * 91.76583 * 9 7 2 12 12 C 1.34778 * 120.00161 * 204.99598 * 11 9 7 13 13 O 1.21280 * 120.00079 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00114 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.46919 * 180.02562 * 14 12 11 16 16 C 1.52997 * 117.50096 * 243.75052 * 15 14 12 17 17 C 1.52996 * 117.49770 * 175.08888 * 15 14 12 18 18 C 1.50700 * 109.47006 * 211.76439 * 9 7 2 19 19 C 1.33389 * 125.20686 * 105.25547 * 18 9 7 20 20 C 1.38423 * 114.92717 * 179.97438 * 19 18 9 21 21 C 1.33388 * 114.91750 * 0.02562 * 20 19 18 22 22 S 1.75889 * 125.20261 * 284.95308 * 18 9 7 23 23 H 0.96998 * 120.00340 * 359.97438 * 1 2 3 24 24 H 0.97010 * 120.00254 * 24.99711 * 11 9 7 25 25 H 1.08991 * 109.47328 * 300.00377 * 14 12 11 26 26 H 1.08999 * 109.46699 * 60.01045 * 14 12 11 27 27 H 1.09001 * 115.54821 * 29.42095 * 15 14 12 28 28 H 1.09001 * 117.50008 * 359.97438 * 16 15 14 29 29 H 1.09001 * 117.50076 * 145.02275 * 16 15 14 30 30 H 1.09002 * 117.49981 * 214.98056 * 17 15 14 31 31 H 1.08996 * 117.50275 * 0.02562 * 17 15 14 32 32 H 1.08000 * 122.53395 * 359.97438 * 19 18 9 33 33 H 1.07997 * 122.54495 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.20319 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5693 2.0045 -1.3975 5 1 1.4121 2.6726 0.6260 6 1 3.5084 1.4623 0.7715 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0983 9 6 3.5051 -1.1975 -0.1389 10 1 3.8200 -0.3198 -0.7033 11 7 4.1182 -1.1686 1.1913 12 6 5.3612 -0.6723 1.3498 13 8 5.9720 -0.2491 0.3912 14 6 5.9917 -0.6420 2.7182 15 6 7.3926 -0.0345 2.6210 16 6 8.5786 -0.9330 2.9769 17 6 8.1571 0.1908 3.9269 18 6 3.9397 -2.4444 -0.8653 19 6 4.3516 -2.4917 -2.1331 20 6 4.7017 -3.7520 -2.5861 21 6 4.5736 -4.7283 -1.6863 22 16 3.9883 -4.0587 -0.1687 23 1 -0.4850 0.8400 0.0004 24 1 3.6296 -1.5068 1.9581 25 1 5.3794 -0.0373 3.3871 26 1 6.0620 -1.6574 3.1083 27 1 7.5347 0.6938 1.8225 28 1 8.3610 -1.9569 3.2808 29 1 9.5012 -0.7956 2.4129 30 1 8.8026 1.0670 3.9876 31 1 7.6624 -0.0942 4.8554 32 1 4.4077 -1.6132 -2.7587 33 1 5.0521 -3.9313 -3.5918 34 1 4.7989 -5.7698 -1.8614 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -7.865222 kcal Electronic energy + Delta-G solvation = -17680.181269 eV Core-core repulsion = 14897.367783 eV Total energy + Delta-G solvation = -2782.813486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72400 -38.72177 -37.88015 -36.24375 -34.38015 -31.99433 -29.90580 -28.49976 -25.26098 -23.41206 -23.18937 -21.91546 -20.99470 -20.12697 -19.25137 -18.12446 -17.85090 -17.08232 -16.44619 -16.32247 -15.84088 -15.45190 -14.88551 -14.81919 -14.26807 -14.08727 -13.81334 -13.43371 -13.22403 -13.03479 -12.86740 -12.58693 -12.37258 -12.29509 -11.98556 -11.74695 -11.48475 -11.26021 -11.09288 -10.88833 -10.64400 -9.91195 -9.39430 -9.23016 -8.48431 -6.58502 0.26056 0.86654 1.24346 1.27016 1.30680 1.42955 1.84578 1.95538 2.20505 2.46145 2.94053 3.11151 3.81944 3.88679 4.07662 4.20599 4.25348 4.31515 4.54340 4.63742 4.73256 4.75229 4.80446 4.80936 4.87467 5.05787 5.21384 5.29056 5.31133 5.36697 5.54637 5.65355 5.85501 6.02813 6.53833 6.92501 7.11878 7.50047 8.64988 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.009051 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.874988 B = 3092.984838 C = 4654.137049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.051 3.949 3 Si 0.927 3.073 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.305 3.695 10 H 0.043 0.957 11 N -0.714 5.714 12 C 0.498 3.502 13 O -0.594 6.594 14 C -0.104 4.104 15 C -0.165 4.165 16 C -0.177 4.177 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.179 4.179 20 C -0.133 4.133 21 C -0.230 4.230 22 S 0.095 5.905 23 H 0.274 0.726 24 H 0.403 0.597 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.162 0.838 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.666 -5.130 5.852 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.153 4.153 3 Si 0.752 3.248 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.201 3.799 10 H 0.060 0.940 11 N -0.364 5.364 12 C 0.286 3.714 13 O -0.476 6.476 14 C -0.143 4.143 15 C -0.183 4.183 16 C -0.214 4.214 17 C -0.197 4.197 18 C -0.271 4.271 19 C -0.209 4.209 20 C -0.163 4.163 21 C -0.365 4.365 22 S 0.357 5.643 23 H 0.084 0.916 24 H 0.239 0.761 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.179 0.821 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.564 -5.345 6.589 15.160 hybrid contribution -0.119 1.494 -1.511 2.128 sum 12.445 -3.852 5.077 13.982 Atomic orbital electron populations 1.69969 1.07661 1.28753 1.48581 1.25615 0.95159 1.01846 0.92694 0.86045 0.79548 0.80142 0.79062 1.20552 1.20168 1.18002 1.21009 0.88996 0.94149 1.51510 0.92600 1.17142 0.91403 0.89752 0.81590 0.93957 1.47260 1.15549 1.62086 1.11555 1.21438 0.81478 0.76366 0.92157 1.90588 1.63487 1.49577 1.43956 1.21284 0.95544 1.04343 0.93156 1.21949 0.91850 1.04055 1.00492 1.23115 0.98194 0.96598 1.03471 1.23095 1.02573 1.00466 0.93517 1.25239 1.03780 0.99141 0.98932 1.20268 1.05387 0.99605 0.95679 1.20276 1.03109 0.91022 1.01927 1.25871 1.10046 1.04322 0.96253 1.83737 1.65533 0.99476 1.15535 0.91619 0.76069 0.87212 0.86633 0.89641 0.87751 0.88926 0.88034 0.86954 0.85786 0.82106 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.86 13.96 21.45 0.30 -52.56 16 2 C 0.05 2.77 5.47 84.65 0.46 3.23 16 3 Si 0.93 44.12 26.86 68.60 1.84 45.96 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -12.08 6.97 99.48 0.69 -11.39 16 7 C -0.52 -27.58 9.02 25.60 0.23 -27.35 16 8 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 9 C 0.31 14.40 1.82 43.50 0.08 14.48 16 10 H 0.04 2.21 5.34 -2.39 -0.01 2.20 16 11 N -0.71 -28.77 4.77 -449.70 -2.15 -30.92 16 12 C 0.50 19.29 7.72 87.66 0.68 19.97 16 13 O -0.59 -27.86 15.23 -3.03 -0.05 -27.90 16 14 C -0.10 -2.83 5.98 29.85 0.18 -2.65 16 15 C -0.16 -4.42 5.41 -10.80 -0.06 -4.48 16 16 C -0.18 -3.79 10.18 30.62 0.31 -3.48 16 17 C -0.16 -3.04 10.25 30.62 0.31 -2.73 16 18 C -0.15 -6.59 5.35 24.59 0.13 -6.46 16 19 C -0.18 -7.29 10.03 21.22 0.21 -7.08 16 20 C -0.13 -4.34 10.18 21.22 0.22 -4.13 16 21 C -0.23 -6.94 11.23 66.72 0.75 -6.19 16 22 S 0.10 3.36 23.17 -56.49 -1.31 2.05 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.40 14.46 8.59 -92.70 -0.80 13.67 16 25 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.12 2.53 7.88 -2.39 -0.02 2.51 16 27 H 0.09 2.83 7.31 -2.39 -0.02 2.81 16 28 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 34 H 0.19 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -67.06 308.08 2.44 -64.62 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.30 Total: 25.61 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.51 Total: -26.86 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.85 Total: -83.48 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.84 Total: 45.96 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -67.06 2.44 -64.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.751 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds