Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48503 * 109.47035 * 89.99959 * 3 2 1 5 5 H 1.48504 * 109.46947 * 209.99951 * 3 2 1 6 6 H 1.48505 * 109.47161 * 329.99791 * 3 2 1 7 7 C 1.37872 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00020 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47542 * 300.00204 * 9 7 2 11 11 N 1.46897 * 109.46753 * 60.00238 * 9 7 2 12 12 C 1.50702 * 109.47031 * 179.97438 * 9 7 2 13 13 C 1.38263 * 119.94337 * 279.72793 * 12 9 7 14 14 C 1.38152 * 120.05245 * 179.72791 * 13 12 9 15 15 C 1.38733 * 119.94464 * 0.52354 * 14 13 12 16 16 O 1.35894 * 120.05406 * 179.72898 * 15 14 13 17 17 C 1.42906 * 116.99682 * 185.95256 * 16 15 14 18 18 C 1.53036 * 113.15160 * 257.99404 * 17 16 15 19 19 S 1.81504 * 89.86315 * 211.87037 * 18 17 16 20 20 C 1.53052 * 113.14859 * 157.56682 * 17 16 15 21 21 C 1.38730 * 119.88629 * 359.74903 * 15 14 13 22 22 C 1.38142 * 119.94651 * 0.02562 * 21 15 14 23 23 H 0.97000 * 119.99938 * 0.02562 * 1 2 3 24 24 H 1.00899 * 111.00125 * 296.04224 * 11 9 7 25 25 H 1.00903 * 111.00222 * 60.00320 * 11 9 7 26 26 H 1.07996 * 119.97580 * 359.97438 * 13 12 9 27 27 H 1.08001 * 120.02515 * 180.30132 * 14 13 12 28 28 H 1.08998 * 112.49275 * 27.78528 * 17 16 15 29 29 H 1.09000 * 113.15510 * 327.11121 * 18 17 16 30 30 H 1.09000 * 113.14790 * 96.59803 * 18 17 16 31 31 H 1.09005 * 113.14515 * 263.40487 * 20 17 16 32 32 H 1.08998 * 113.14772 * 32.84855 * 20 17 16 33 33 H 1.07998 * 120.02549 * 179.97438 * 21 15 14 34 34 H 1.08002 * 119.97208 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8746 -0.6808 -0.8904 11 7 4.0016 -0.5007 1.1988 12 6 4.0139 -2.6148 0.0013 13 6 4.0535 -3.3317 1.1830 14 6 4.5083 -4.6362 1.1859 15 6 4.9356 -5.2232 0.0038 16 8 5.3886 -6.5044 0.0051 17 6 5.9339 -7.0009 -1.2190 18 6 4.9682 -7.9094 -1.9832 19 16 6.3757 -8.8600 -2.6232 20 6 6.8841 -8.1838 -1.0183 21 6 4.9001 -4.4999 -1.1795 22 6 4.4401 -3.1973 -1.1780 23 1 -0.4850 0.8401 -0.0004 24 1 3.7322 0.4716 1.1897 25 1 3.6784 -0.9578 2.0383 26 1 3.7249 -2.8728 2.1037 27 1 4.5345 -5.1973 2.1083 28 1 6.3586 -6.2102 -1.8374 29 1 4.3196 -8.4922 -1.3291 30 1 4.4139 -7.3865 -2.7625 31 1 7.9336 -7.8904 -0.9901 32 1 6.6059 -8.8191 -0.1774 33 1 5.2326 -4.9545 -2.1010 34 1 4.4119 -2.6340 -2.0990 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 20.379204 kcal Electronic energy + Delta-G solvation = -17337.871116 eV Core-core repulsion = 14556.282400 eV Total energy + Delta-G solvation = -2781.588716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10291 -38.00610 -35.25693 -34.11082 -31.84654 -30.56404 -28.96916 -26.66587 -26.06865 -23.71568 -22.58264 -21.39172 -19.80404 -18.47498 -17.07627 -16.72384 -15.85181 -15.69948 -15.49417 -14.79569 -14.57025 -14.24654 -13.73495 -13.35649 -13.28869 -12.95172 -12.71205 -12.57446 -12.23013 -11.86728 -11.70041 -11.38738 -10.98115 -10.86792 -10.75389 -10.48590 -10.33777 -10.10061 -9.56721 -8.81572 -8.51399 -8.18090 -7.86163 -7.36766 -6.26498 -4.30326 1.36786 1.48979 1.83565 1.96496 3.10449 3.20774 3.25016 3.25421 3.95928 4.19911 4.32626 4.40001 4.54711 4.98031 5.02637 5.03100 5.16528 5.22417 5.31986 5.40671 5.58226 5.82874 5.95591 6.03488 6.15927 6.41559 6.66719 6.75397 6.95087 7.16864 7.34462 7.48621 7.67611 8.03507 8.24283 8.45527 8.81080 9.32524 10.86054 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.044059 B = 0.003876 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.356472 B = 7221.517076 C = 7386.497676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.259 1.259 6 H -0.291 1.291 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.208 3.792 10 H 0.049 0.951 11 N -0.849 5.849 12 C -0.047 4.047 13 C -0.070 4.070 14 C -0.147 4.147 15 C 0.094 3.906 16 O -0.300 6.300 17 C 0.084 3.916 18 C -0.107 4.107 19 S -0.269 6.269 20 C -0.082 4.082 21 C -0.205 4.205 22 C -0.085 4.085 23 H 0.266 0.734 24 H 0.317 0.683 25 H 0.331 0.669 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 -12.344 -1.212 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.184 1.184 6 H -0.218 1.218 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.098 3.902 10 H 0.067 0.933 11 N -0.382 5.382 12 C -0.048 4.048 13 C -0.088 4.088 14 C -0.166 4.166 15 C 0.050 3.950 16 O -0.215 6.215 17 C 0.024 3.976 18 C -0.255 4.255 19 S -0.044 6.044 20 C -0.231 4.231 21 C -0.223 4.223 22 C -0.103 4.103 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.971 -13.368 -2.467 18.789 hybrid contribution -1.213 1.682 0.775 2.214 sum 11.759 -11.686 -1.691 16.664 Atomic orbital electron populations 1.69898 1.06221 1.27214 1.49300 1.25043 0.94844 0.99044 0.94162 0.87007 0.80353 0.83830 0.78631 1.20119 1.18368 1.21755 1.21651 0.89627 0.94944 1.52342 0.90547 1.18471 0.93606 0.87434 0.90639 0.93307 1.59737 1.66937 1.05623 1.05943 1.19979 0.95291 0.97165 0.92325 1.20766 0.97078 0.92312 0.98649 1.20339 1.04806 0.95605 0.95840 1.18803 0.98561 0.83045 0.94596 1.86120 1.75138 1.26584 1.33632 1.23926 0.92083 0.95322 0.86224 1.25121 0.99905 0.98643 1.01864 1.89035 1.18300 1.72297 1.24775 1.24598 1.04029 0.97439 0.96992 1.21041 1.08141 0.96563 0.96584 1.20804 0.97335 0.93960 0.98248 0.92356 0.86694 0.85687 0.85541 0.85963 0.86281 0.86593 0.87785 0.87678 0.86600 0.86271 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 20.39 24.61 -169.99 -4.18 16.21 16 4 H -0.27 -6.15 7.01 56.52 0.40 -5.76 16 5 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.55 -14.65 9.29 -34.44 -0.32 -14.97 16 8 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 9 C 0.21 4.73 2.48 -70.02 -0.17 4.56 16 10 H 0.05 1.15 7.06 -51.93 -0.37 0.78 16 11 N -0.85 -18.02 8.97 -6.65 -0.06 -18.08 16 12 C -0.05 -0.94 4.90 -104.60 -0.51 -1.45 16 13 C -0.07 -1.27 9.28 -39.60 -0.37 -1.64 16 14 C -0.15 -2.38 9.99 -39.43 -0.39 -2.77 16 15 C 0.09 1.44 6.68 -39.22 -0.26 1.18 16 16 O -0.30 -3.96 10.10 -19.41 -0.20 -4.16 16 17 C 0.08 0.86 3.26 -26.69 -0.09 0.78 16 18 C -0.11 -1.04 7.79 37.18 0.29 -0.75 16 19 S -0.27 -2.75 24.80 -107.50 -2.67 -5.41 16 20 C -0.08 -0.71 7.79 37.18 0.29 -0.42 16 21 C -0.20 -3.14 9.00 -39.43 -0.35 -3.49 16 22 C -0.08 -1.52 9.66 -39.61 -0.38 -1.90 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.32 6.88 4.29 -39.29 -0.17 6.71 16 25 H 0.33 6.59 7.32 -39.29 -0.29 6.31 16 26 H 0.13 2.21 6.64 -52.49 -0.35 1.86 16 27 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.12 1.17 6.08 -51.93 -0.32 0.86 16 29 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.12 1.49 5.97 -52.49 -0.31 1.17 16 34 H 0.12 2.03 8.03 -52.49 -0.42 1.61 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -29.38 291.01 -8.24 -37.62 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -3.93 Total: 13.81 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.37 Total: -18.98 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.71 Total: -43.48 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.20 Total: -4.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.18 Total: 16.21 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.67 Total: -5.41 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.38 -8.24 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.003 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds