Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48503 * 109.47035 * 89.99959 * 3 2 1 5 5 H 1.48504 * 109.46947 * 209.99951 * 3 2 1 6 6 H 1.48505 * 109.47161 * 329.99791 * 3 2 1 7 7 C 1.37872 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00020 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47542 * 300.00204 * 9 7 2 11 11 N 1.46897 * 109.46753 * 60.00238 * 9 7 2 12 12 C 1.50702 * 109.47031 * 179.97438 * 9 7 2 13 13 C 1.38263 * 119.94337 * 279.72793 * 12 9 7 14 14 C 1.38152 * 120.05245 * 179.72791 * 13 12 9 15 15 C 1.38733 * 119.94464 * 0.52354 * 14 13 12 16 16 O 1.35894 * 120.05406 * 179.72898 * 15 14 13 17 17 C 1.42906 * 116.99682 * 185.95256 * 16 15 14 18 18 C 1.53036 * 113.15160 * 257.99404 * 17 16 15 19 19 S 1.81504 * 89.86315 * 211.87037 * 18 17 16 20 20 C 1.53052 * 113.14859 * 157.56682 * 17 16 15 21 21 C 1.38730 * 119.88629 * 359.74903 * 15 14 13 22 22 C 1.38142 * 119.94651 * 0.02562 * 21 15 14 23 23 H 0.97000 * 119.99938 * 0.02562 * 1 2 3 24 24 H 1.00899 * 111.00125 * 296.04224 * 11 9 7 25 25 H 1.00903 * 111.00222 * 60.00320 * 11 9 7 26 26 H 1.07996 * 119.97580 * 359.97438 * 13 12 9 27 27 H 1.08001 * 120.02515 * 180.30132 * 14 13 12 28 28 H 1.08998 * 112.49275 * 27.78528 * 17 16 15 29 29 H 1.09000 * 113.15510 * 327.11121 * 18 17 16 30 30 H 1.09000 * 113.14790 * 96.59803 * 18 17 16 31 31 H 1.09005 * 113.14515 * 263.40487 * 20 17 16 32 32 H 1.08998 * 113.14772 * 32.84855 * 20 17 16 33 33 H 1.07998 * 120.02549 * 179.97438 * 21 15 14 34 34 H 1.08002 * 119.97208 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8746 -0.6808 -0.8904 11 7 4.0016 -0.5007 1.1988 12 6 4.0139 -2.6148 0.0013 13 6 4.0535 -3.3317 1.1830 14 6 4.5083 -4.6362 1.1859 15 6 4.9356 -5.2232 0.0038 16 8 5.3886 -6.5044 0.0051 17 6 5.9339 -7.0009 -1.2190 18 6 4.9682 -7.9094 -1.9832 19 16 6.3757 -8.8600 -2.6232 20 6 6.8841 -8.1838 -1.0183 21 6 4.9001 -4.4999 -1.1795 22 6 4.4401 -3.1973 -1.1780 23 1 -0.4850 0.8401 -0.0004 24 1 3.7322 0.4716 1.1897 25 1 3.6784 -0.9578 2.0383 26 1 3.7249 -2.8728 2.1037 27 1 4.5345 -5.1973 2.1083 28 1 6.3586 -6.2102 -1.8374 29 1 4.3196 -8.4922 -1.3291 30 1 4.4139 -7.3865 -2.7625 31 1 7.9336 -7.8904 -0.9901 32 1 6.6059 -8.8191 -0.1774 33 1 5.2326 -4.9545 -2.1010 34 1 4.4119 -2.6340 -2.0990 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 1.036604 kcal Electronic energy + Delta-G solvation = -17338.709874 eV Core-core repulsion = 14556.282400 eV Total energy + Delta-G solvation = -2782.427474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23856 -39.27353 -36.66022 -35.35421 -33.83758 -31.86717 -30.37821 -27.99316 -27.38391 -25.01873 -24.00246 -22.61537 -21.19585 -19.54425 -19.07022 -17.64173 -17.48465 -16.77142 -16.55620 -16.24259 -15.94948 -15.58323 -15.04171 -14.82959 -14.43898 -14.20550 -13.98422 -13.85897 -13.70546 -13.44243 -12.85373 -12.77067 -12.57834 -12.21493 -11.95437 -11.76060 -11.66036 -11.50448 -11.40249 -10.90133 -9.82089 -9.51356 -8.97013 -8.84814 -8.38256 -6.46785 0.52002 0.55970 0.69189 0.72547 1.25425 1.33889 1.42989 2.21486 2.22488 2.90078 2.97058 3.21870 3.61688 3.74508 3.94587 3.99906 4.06735 4.27948 4.32901 4.39798 4.46770 4.59891 4.61490 4.69842 4.85968 4.98650 5.21129 5.39942 5.41538 5.52343 5.86773 5.93049 6.08949 6.42033 6.48468 6.58630 6.72255 7.20236 8.77748 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.044059 B = 0.003876 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.356472 B = 7221.517076 C = 7386.497676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.255 1.255 5 H -0.246 1.246 6 H -0.294 1.294 7 C -0.546 4.546 8 H 0.031 0.969 9 C 0.215 3.785 10 H 0.042 0.958 11 N -0.838 5.838 12 C -0.083 4.083 13 C -0.080 4.080 14 C -0.151 4.151 15 C 0.105 3.895 16 O -0.300 6.300 17 C 0.077 3.923 18 C -0.103 4.103 19 S -0.295 6.295 20 C -0.069 4.069 21 C -0.198 4.198 22 C -0.096 4.096 23 H 0.268 0.732 24 H 0.315 0.685 25 H 0.338 0.662 26 H 0.125 0.875 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.129 -12.974 -1.139 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.180 1.180 5 H -0.170 1.170 6 H -0.221 1.221 7 C -0.585 4.585 8 H 0.050 0.950 9 C 0.105 3.895 10 H 0.060 0.940 11 N -0.371 5.371 12 C -0.084 4.084 13 C -0.098 4.098 14 C -0.170 4.170 15 C 0.061 3.939 16 O -0.214 6.214 17 C 0.018 3.982 18 C -0.251 4.251 19 S -0.070 6.070 20 C -0.217 4.217 21 C -0.216 4.216 22 C -0.115 4.115 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.143 0.857 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.170 -14.025 -2.385 20.797 hybrid contribution -1.879 1.666 0.728 2.615 sum 13.291 -12.358 -1.657 18.224 Atomic orbital electron populations 1.70053 1.08189 1.28295 1.51318 1.25905 0.95546 1.03019 0.93782 0.85939 0.79183 0.78749 0.79716 1.18039 1.17025 1.22073 1.21881 0.92038 0.93163 1.51453 0.95031 1.18276 0.90713 0.89665 0.90818 0.94025 1.59695 1.66281 1.05391 1.05755 1.19888 0.98187 0.96251 0.94096 1.20811 0.97613 0.93343 0.98079 1.20532 1.04231 0.94935 0.97280 1.18865 0.97082 0.83780 0.94219 1.86133 1.74888 1.25148 1.35260 1.24212 0.92652 0.95976 0.85396 1.25114 0.99735 0.98396 1.01877 1.89215 1.19062 1.72573 1.26107 1.24589 1.04630 0.96343 0.96109 1.21281 1.06950 0.95448 0.97971 1.20956 0.97593 0.95205 0.97707 0.92277 0.86917 0.84912 0.85670 0.83845 0.85444 0.86245 0.87451 0.85990 0.85645 0.83236 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.96 21.45 0.30 -56.63 16 2 C 0.02 0.93 5.47 84.65 0.46 1.39 16 3 Si 0.94 42.06 24.61 68.60 1.69 43.75 16 4 H -0.26 -10.57 7.01 99.48 0.70 -9.88 16 5 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.55 -30.10 9.29 25.60 0.24 -29.86 16 8 H 0.03 1.97 7.98 -2.91 -0.02 1.95 16 9 C 0.22 9.81 2.48 43.42 0.11 9.92 16 10 H 0.04 1.95 7.06 -2.39 -0.02 1.93 16 11 N -0.84 -34.75 8.97 -174.96 -1.57 -36.32 16 12 C -0.08 -3.35 4.90 -19.85 -0.10 -3.44 16 13 C -0.08 -2.88 9.28 22.26 0.21 -2.68 16 14 C -0.15 -4.63 9.99 22.37 0.22 -4.41 16 15 C 0.11 2.98 6.68 22.51 0.15 3.13 16 16 O -0.30 -6.98 10.10 -92.36 -0.93 -7.91 16 17 C 0.08 1.34 3.26 30.62 0.10 1.43 16 18 C -0.10 -1.75 7.79 71.99 0.56 -1.19 16 19 S -0.29 -5.36 24.80 -56.49 -1.40 -6.76 16 20 C -0.07 -0.97 7.79 72.00 0.56 -0.41 16 21 C -0.20 -5.62 9.00 22.36 0.20 -5.42 16 22 C -0.10 -3.35 9.66 22.25 0.22 -3.14 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.32 13.12 4.29 -89.69 -0.39 12.73 16 25 H 0.34 13.27 7.32 -89.69 -0.66 12.61 16 26 H 0.13 4.38 6.64 -2.91 -0.02 4.36 16 27 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.13 2.05 6.08 -2.39 -0.01 2.04 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.15 3.24 5.97 -2.91 -0.02 3.23 16 34 H 0.13 4.13 8.03 -2.91 -0.02 4.11 16 Total: -1.00 -64.16 291.01 1.04 -63.12 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.03 Total: 35.44 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 2.93 Total: -34.68 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.27 Total: -92.95 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.93 Total: -7.91 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.69 Total: 43.75 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.40 Total: -6.76 kcal Total: -64.16 1.04 -63.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.152 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds