Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00384 * 3 2 1 5 5 H 1.48506 * 109.46671 * 29.99980 * 3 2 1 6 6 H 1.48495 * 109.47461 * 150.00094 * 3 2 1 7 7 C 1.37878 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99740 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47289 * 59.99919 * 9 7 2 11 11 N 1.46902 * 109.47115 * 300.00333 * 9 7 2 12 12 C 1.50700 * 109.47047 * 180.02562 * 9 7 2 13 13 C 1.38268 * 119.94505 * 259.99894 * 12 9 7 14 14 C 1.38135 * 120.05718 * 180.02562 * 13 12 9 15 15 C 1.38732 * 119.94431 * 0.25537 * 14 13 12 16 16 O 1.35905 * 120.05673 * 179.74474 * 15 14 13 17 17 C 1.42893 * 116.99685 * 5.92968 * 16 15 14 18 18 C 1.53038 * 113.15546 * 257.99109 * 17 16 15 19 19 S 1.81496 * 89.86503 * 211.87129 * 18 17 16 20 20 C 1.53049 * 113.14866 * 157.56151 * 17 16 15 21 21 C 1.38734 * 119.89012 * 359.47170 * 15 14 13 22 22 C 1.38147 * 119.93998 * 0.54903 * 21 15 14 23 23 H 0.96996 * 120.00199 * 359.97438 * 1 2 3 24 24 H 1.00892 * 111.00165 * 176.04686 * 11 9 7 25 25 H 1.00905 * 110.99723 * 299.99791 * 11 9 7 26 26 H 1.08006 * 119.96669 * 359.97438 * 13 12 9 27 27 H 1.08002 * 120.02828 * 179.97438 * 14 13 12 28 28 H 1.09001 * 112.49816 * 27.78116 * 17 16 15 29 29 H 1.09009 * 113.15042 * 327.11761 * 18 17 16 30 30 H 1.08999 * 113.14979 * 96.59609 * 18 17 16 31 31 H 1.08991 * 113.15255 * 263.40948 * 20 17 16 32 32 H 1.09003 * 113.14521 * 32.85197 * 20 17 16 33 33 H 1.08002 * 120.03432 * 180.25242 * 21 15 14 34 34 H 1.07997 * 119.97465 * 179.72593 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6242 -2.5568 -0.8902 11 7 0.4070 -2.5773 1.1992 12 6 2.2305 -3.6445 -0.0005 13 6 2.5209 -4.3043 -1.1804 14 6 3.4179 -5.3549 -1.1830 15 6 4.0235 -5.7512 0.0005 16 8 4.9024 -6.7879 0.0015 17 6 5.2559 -7.3398 -1.2682 18 6 4.5330 -8.6531 -1.5758 19 16 5.9750 -9.2206 -2.5207 20 6 6.5936 -8.0832 -1.2498 21 6 3.7348 -5.0840 1.1821 22 6 2.8367 -4.0343 1.1795 23 1 -0.4850 0.8400 0.0004 24 1 -0.1569 -3.4138 1.1907 25 1 0.9654 -2.5260 2.0381 26 1 2.0454 -3.9985 -2.1007 27 1 3.6440 -5.8702 -2.1048 28 1 5.1819 -6.6107 -2.0751 29 1 4.3394 -9.2541 -0.6872 30 1 3.6431 -8.5186 -2.1908 31 1 7.4284 -7.4716 -1.5918 32 1 6.7982 -8.5735 -0.2980 33 1 4.2081 -5.3880 2.1041 34 1 2.6083 -3.5173 2.0997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = 17.690232 kcal Electronic energy + Delta-G solvation = -17289.551350 eV Core-core repulsion = 14507.846032 eV Total energy + Delta-G solvation = -2781.705319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11842 -37.97964 -35.10579 -33.82939 -31.49560 -30.56488 -28.57113 -26.69306 -25.89910 -23.73539 -22.41430 -21.43573 -19.84120 -18.49034 -16.77451 -16.41906 -15.70216 -15.60743 -15.18055 -14.83110 -14.39144 -14.15980 -13.63785 -13.50088 -13.32264 -12.98393 -12.75709 -12.32521 -12.00057 -11.67386 -11.40596 -11.22554 -11.03345 -10.85032 -10.73154 -10.54702 -10.30180 -9.80172 -9.19796 -8.55184 -8.43755 -8.20681 -7.61466 -7.06111 -5.88803 -4.03949 1.34043 1.45868 1.80101 1.94871 3.18665 3.32827 3.40094 3.43115 3.93039 4.28070 4.37915 4.50137 4.52966 4.94694 5.00047 5.14690 5.19110 5.29006 5.35858 5.38320 5.74832 5.89554 5.99017 6.08267 6.34200 6.44402 6.69223 6.95385 7.05275 7.19070 7.56569 7.66746 7.89588 8.17698 8.61983 8.99336 9.13961 9.64962 11.15304 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.003829 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.690832 B = 7311.608224 C = 7492.400079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.255 3.745 10 H 0.046 0.954 11 N -0.810 5.810 12 C -0.099 4.099 13 C -0.084 4.084 14 C -0.205 4.205 15 C 0.090 3.910 16 O -0.301 6.301 17 C 0.084 3.916 18 C -0.107 4.107 19 S -0.268 6.268 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.085 4.085 23 H 0.256 0.744 24 H 0.298 0.702 25 H 0.317 0.683 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -15.140 -1.370 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.145 3.855 10 H 0.064 0.936 11 N -0.336 5.336 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.223 4.223 15 C 0.047 3.953 16 O -0.216 6.216 17 C 0.024 3.976 18 C -0.255 4.255 19 S -0.043 6.043 20 C -0.231 4.231 21 C -0.166 4.166 22 C -0.103 4.103 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.979 -15.286 -2.576 17.914 hybrid contribution 0.743 0.642 0.812 1.274 sum 9.722 -14.645 -1.765 17.666 Atomic orbital electron populations 1.70099 1.05674 1.25719 1.46665 1.24951 0.94633 0.98535 0.94193 0.86762 0.80031 0.84050 0.78010 1.20776 1.21256 1.20000 1.20841 0.92218 0.89463 1.54455 0.92850 1.18178 0.87485 0.88870 0.90971 0.93644 1.59199 1.28073 1.41992 1.04294 1.21761 0.98891 0.97500 0.92052 1.20922 0.96688 0.94163 0.98544 1.21122 1.02618 1.02108 0.96500 1.18801 0.92475 0.89258 0.94802 1.86113 1.59695 1.46499 1.29248 1.23925 0.92099 0.93857 0.87684 1.25111 1.00354 0.98261 1.01803 1.89039 1.09533 1.64367 1.41333 1.24601 1.00847 0.97536 1.00102 1.20341 1.02199 0.98033 0.95981 1.20842 0.95404 0.95159 0.98924 0.93434 0.89169 0.87032 0.86073 0.86414 0.86267 0.86671 0.87872 0.87630 0.86607 0.86143 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.24 12.77 55.43 0.71 -23.53 16 2 C 0.08 2.29 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.21 8.70 -34.44 -0.30 -14.51 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.25 6.07 2.85 -70.01 -0.20 5.87 16 10 H 0.05 1.19 8.00 -51.93 -0.42 0.78 16 11 N -0.81 -18.32 8.36 -6.65 -0.06 -18.38 16 12 C -0.10 -1.99 4.89 -104.60 -0.51 -2.50 16 13 C -0.08 -1.52 9.66 -39.61 -0.38 -1.90 16 14 C -0.20 -3.15 9.00 -39.44 -0.35 -3.50 16 15 C 0.09 1.39 6.68 -39.22 -0.26 1.13 16 16 O -0.30 -3.98 10.10 -19.44 -0.20 -4.17 16 17 C 0.08 0.87 3.26 -26.69 -0.09 0.78 16 18 C -0.11 -1.00 7.79 37.18 0.29 -0.71 16 19 S -0.27 -2.71 24.80 -107.50 -2.67 -5.37 16 20 C -0.08 -0.73 7.79 37.18 0.29 -0.44 16 21 C -0.15 -2.37 9.99 -39.43 -0.39 -2.76 16 22 C -0.08 -1.54 9.28 -39.60 -0.37 -1.90 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.30 6.03 9.06 -39.30 -0.36 5.67 16 25 H 0.32 6.78 7.33 -39.29 -0.29 6.50 16 26 H 0.12 2.09 8.04 -52.48 -0.42 1.67 16 27 H 0.12 1.49 5.97 -52.49 -0.31 1.18 16 28 H 0.12 1.22 6.08 -51.93 -0.32 0.90 16 29 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.13 2.19 6.65 -52.49 -0.35 1.84 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -29.24 299.98 -9.20 -38.44 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.11 Total: 10.75 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.37 Total: -18.26 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.65 Total: -41.91 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.17 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.67 Total: -5.37 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.24 -9.20 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.126 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds