Wall clock time and date at job start Mon Mar 30 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00384 * 3 2 1 5 5 H 1.48506 * 109.46671 * 29.99980 * 3 2 1 6 6 H 1.48495 * 109.47461 * 150.00094 * 3 2 1 7 7 C 1.37878 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99740 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47289 * 59.99919 * 9 7 2 11 11 N 1.46902 * 109.47115 * 300.00333 * 9 7 2 12 12 C 1.50700 * 109.47047 * 180.02562 * 9 7 2 13 13 C 1.38268 * 119.94505 * 259.99894 * 12 9 7 14 14 C 1.38135 * 120.05718 * 180.02562 * 13 12 9 15 15 C 1.38732 * 119.94431 * 0.25537 * 14 13 12 16 16 O 1.35905 * 120.05673 * 179.74474 * 15 14 13 17 17 C 1.42893 * 116.99685 * 5.92968 * 16 15 14 18 18 C 1.53038 * 113.15546 * 257.99109 * 17 16 15 19 19 S 1.81496 * 89.86503 * 211.87129 * 18 17 16 20 20 C 1.53049 * 113.14866 * 157.56151 * 17 16 15 21 21 C 1.38734 * 119.89012 * 359.47170 * 15 14 13 22 22 C 1.38147 * 119.93998 * 0.54903 * 21 15 14 23 23 H 0.96996 * 120.00199 * 359.97438 * 1 2 3 24 24 H 1.00892 * 111.00165 * 176.04686 * 11 9 7 25 25 H 1.00905 * 110.99723 * 299.99791 * 11 9 7 26 26 H 1.08006 * 119.96669 * 359.97438 * 13 12 9 27 27 H 1.08002 * 120.02828 * 179.97438 * 14 13 12 28 28 H 1.09001 * 112.49816 * 27.78116 * 17 16 15 29 29 H 1.09009 * 113.15042 * 327.11761 * 18 17 16 30 30 H 1.08999 * 113.14979 * 96.59609 * 18 17 16 31 31 H 1.08991 * 113.15255 * 263.40948 * 20 17 16 32 32 H 1.09003 * 113.14521 * 32.85197 * 20 17 16 33 33 H 1.08002 * 120.03432 * 180.25242 * 21 15 14 34 34 H 1.07997 * 119.97465 * 179.72593 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6242 -2.5568 -0.8902 11 7 0.4070 -2.5773 1.1992 12 6 2.2305 -3.6445 -0.0005 13 6 2.5209 -4.3043 -1.1804 14 6 3.4179 -5.3549 -1.1830 15 6 4.0235 -5.7512 0.0005 16 8 4.9024 -6.7879 0.0015 17 6 5.2559 -7.3398 -1.2682 18 6 4.5330 -8.6531 -1.5758 19 16 5.9750 -9.2206 -2.5207 20 6 6.5936 -8.0832 -1.2498 21 6 3.7348 -5.0840 1.1821 22 6 2.8367 -4.0343 1.1795 23 1 -0.4850 0.8400 0.0004 24 1 -0.1569 -3.4138 1.1907 25 1 0.9654 -2.5260 2.0381 26 1 2.0454 -3.9985 -2.1007 27 1 3.6440 -5.8702 -2.1048 28 1 5.1819 -6.6107 -2.0751 29 1 4.3394 -9.2541 -0.6872 30 1 3.6431 -8.5186 -2.1908 31 1 7.4284 -7.4716 -1.5918 32 1 6.7982 -8.5735 -0.2980 33 1 4.2081 -5.3880 2.1041 34 1 2.6083 -3.5173 2.0997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:21 Heat of formation + Delta-G solvation = -0.245421 kcal Electronic energy + Delta-G solvation = -17290.329099 eV Core-core repulsion = 14507.846032 eV Total energy + Delta-G solvation = -2782.483067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25659 -39.24290 -36.38248 -35.23574 -33.42768 -31.88007 -30.03345 -27.85028 -27.39649 -25.02647 -23.87420 -22.66465 -21.24765 -19.55384 -18.45249 -17.58308 -16.84280 -16.79948 -16.59291 -16.19057 -15.88315 -15.64953 -14.90611 -14.85563 -14.39381 -14.17726 -13.98923 -13.73503 -13.30407 -13.18675 -12.84159 -12.67074 -12.54713 -12.39196 -11.88773 -11.74946 -11.64466 -11.44679 -11.11244 -10.52553 -9.86275 -9.08215 -8.98347 -8.73271 -7.95407 -6.17081 0.47811 0.53870 0.68029 0.70449 1.44038 1.45855 1.54869 2.19001 2.47904 2.91846 3.19439 3.28087 3.59659 3.72649 3.95672 4.03967 4.26881 4.30944 4.35075 4.45873 4.48806 4.57961 4.60354 4.73361 4.86288 5.09838 5.36064 5.39001 5.54125 5.77938 5.85738 5.97264 6.21203 6.46796 6.69271 7.14723 7.31070 7.55524 9.07270 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.003829 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.690832 B = 7311.608224 C = 7492.400079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.045 0.955 9 C 0.260 3.740 10 H 0.010 0.990 11 N -0.821 5.821 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.197 4.197 15 C 0.104 3.896 16 O -0.300 6.300 17 C 0.075 3.925 18 C -0.099 4.099 19 S -0.295 6.295 20 C -0.071 4.071 21 C -0.148 4.148 22 C -0.089 4.089 23 H 0.255 0.745 24 H 0.311 0.689 25 H 0.324 0.676 26 H 0.119 0.881 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 -16.295 -1.219 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.063 0.937 9 C 0.150 3.850 10 H 0.028 0.972 11 N -0.348 5.348 12 C -0.130 4.130 13 C -0.115 4.115 14 C -0.215 4.215 15 C 0.059 3.941 16 O -0.214 6.214 17 C 0.016 3.984 18 C -0.247 4.247 19 S -0.070 6.070 20 C -0.218 4.218 21 C -0.167 4.167 22 C -0.108 4.108 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.769 -16.462 -2.431 19.821 hybrid contribution 0.266 0.848 0.735 1.153 sum 11.034 -15.614 -1.696 19.194 Atomic orbital electron populations 1.70222 1.06999 1.26303 1.48120 1.25662 0.95384 1.01687 0.94077 0.85787 0.78814 0.80215 0.78040 1.20330 1.21085 1.19585 1.21151 0.92007 0.91134 1.53655 0.93697 1.17819 0.87708 0.89600 0.89905 0.97186 1.59000 1.28521 1.43052 1.04216 1.21361 0.99976 0.97749 0.93874 1.20981 0.97581 0.95098 0.97808 1.21315 1.01265 1.01011 0.97940 1.18851 0.91855 0.89051 0.94356 1.86129 1.58808 1.45491 1.30983 1.24198 0.93352 0.94212 0.86597 1.25091 1.00145 0.97500 1.01984 1.89234 1.10741 1.64896 1.42126 1.24597 1.00341 0.96856 1.00050 1.20530 1.01497 0.97271 0.97391 1.20824 0.95900 0.95968 0.98102 0.93619 0.87785 0.86346 0.86333 0.83487 0.85845 0.85947 0.87251 0.86326 0.85515 0.83882 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.38 12.77 21.45 0.27 -51.11 16 2 C 0.04 1.96 5.39 84.66 0.46 2.42 16 3 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.48 8.70 25.60 0.22 -29.26 16 8 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 9 C 0.26 12.73 2.85 43.42 0.12 12.85 16 10 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 11 N -0.82 -37.95 8.36 -174.95 -1.46 -39.41 16 12 C -0.13 -5.13 4.89 -19.85 -0.10 -5.22 16 13 C -0.10 -3.41 9.66 22.25 0.21 -3.20 16 14 C -0.20 -5.62 9.00 22.36 0.20 -5.41 16 15 C 0.10 2.89 6.68 22.51 0.15 3.04 16 16 O -0.30 -6.88 10.10 -92.48 -0.93 -7.81 16 17 C 0.08 1.31 3.26 30.62 0.10 1.41 16 18 C -0.10 -1.56 7.79 71.99 0.56 -1.00 16 19 S -0.30 -5.28 24.80 -56.49 -1.40 -6.68 16 20 C -0.07 -1.01 7.79 72.00 0.56 -0.45 16 21 C -0.15 -4.45 9.99 22.37 0.22 -4.23 16 22 C -0.09 -3.18 9.28 22.26 0.21 -2.97 16 23 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 24 H 0.31 12.84 9.06 -89.70 -0.81 12.03 16 25 H 0.32 14.06 7.33 -89.69 -0.66 13.40 16 26 H 0.12 4.16 8.04 -2.91 -0.02 4.14 16 27 H 0.15 3.26 5.97 -2.91 -0.02 3.24 16 28 H 0.12 2.09 6.08 -2.39 -0.01 2.08 16 29 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.12 4.31 6.65 -2.91 -0.02 4.29 16 Total: -1.00 -62.53 299.98 1.09 -61.44 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.34 Total: 29.98 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 2.92 Total: -32.02 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -1.19 Total: -90.52 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.93 Total: -7.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.40 Total: -6.68 kcal Total: -62.53 1.09 -61.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.196 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds