Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35760 * 116.99453 * 2 1 4 4 C 1.41008 * 120.22467 * 90.00035 * 3 2 1 5 5 C 1.40759 * 133.04179 * 359.95460 * 4 3 2 6 6 C 1.50700 * 126.23824 * 0.05912 * 5 4 3 7 7 C 1.39186 * 107.52483 * 180.02562 * 5 4 3 8 8 C 1.39892 * 125.70719 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99854 * 22.04084 * 8 7 5 10 10 C 1.40121 * 119.99772 * 202.04543 * 8 7 5 11 11 N 1.30801 * 120.00140 * 166.06764 * 10 8 7 12 12 Si 1.86798 * 120.00065 * 346.06200 * 10 8 7 13 13 H 1.48499 * 109.47067 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.47274 * 300.00450 * 12 10 8 15 15 H 1.48497 * 109.47409 * 60.00248 * 12 10 8 16 16 N 1.38335 * 108.58706 * 0.24088 * 7 5 4 17 17 H 0.96997 * 125.62704 * 179.75676 * 16 7 5 18 18 C 1.38190 * 108.74766 * 359.60033 * 16 7 5 19 19 C 1.38837 * 132.67507 * 180.10514 * 18 16 7 20 20 C 1.38087 * 120.18637 * 180.31633 * 19 18 16 21 21 C 1.38181 * 120.22508 * 269.92872 * 3 2 1 22 22 Cl 1.73592 * 119.82246 * 0.05683 * 21 3 2 23 23 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47370 * 300.00026 * 1 2 3 25 25 H 1.09001 * 109.46604 * 60.00375 * 1 2 3 26 26 H 1.09003 * 109.47022 * 270.00345 * 6 5 4 27 27 H 1.08997 * 109.47121 * 29.99966 * 6 5 4 28 28 H 1.09000 * 109.47234 * 150.00586 * 6 5 4 29 29 H 0.97005 * 119.99303 * 354.36410 * 11 10 8 30 30 H 1.08002 * 119.90369 * 0.29826 * 19 18 16 31 31 H 1.07997 * 119.61760 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2097 0.0000 4 6 2.3674 1.8422 1.2184 5 6 2.1828 1.4814 2.5664 6 6 1.5381 0.2156 3.0695 7 6 2.7048 2.5065 3.3499 8 6 2.7198 2.5386 4.7484 9 1 2.6444 1.6195 5.3104 10 6 2.8325 3.7633 5.4199 11 7 2.5759 3.8330 6.7006 12 14 3.3492 5.2964 4.4861 13 1 3.3931 6.4520 5.4176 14 1 4.6953 5.0860 3.8953 15 1 2.3706 5.5698 3.4032 16 7 3.2010 3.4911 2.5144 17 1 3.6176 4.3187 2.8015 18 6 3.0085 3.0995 1.2032 19 6 3.3139 3.6974 -0.0120 20 6 2.9925 3.0654 -1.1970 21 6 2.3623 1.8288 -1.1940 22 17 1.9692 1.0564 -2.6980 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 0.4668 0.3766 3.1901 27 1 1.7063 -0.5877 2.3523 28 1 1.9747 -0.0575 4.0302 29 1 2.2294 3.0572 7.1686 30 1 3.8041 4.6596 -0.0306 31 1 3.2347 3.5386 -2.1371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = -15.408436 kcal Electronic energy + Delta-G solvation = -17831.631911 eV Core-core repulsion = 14910.614526 eV Total energy + Delta-G solvation = -2921.017385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07793 -39.55209 -37.64412 -36.79242 -35.40614 -33.52430 -30.99705 -30.45000 -28.17144 -27.70252 -26.13216 -23.20146 -22.67874 -20.68016 -19.92436 -19.30926 -17.44144 -17.25357 -16.69218 -16.43926 -15.92700 -15.54960 -15.17757 -14.89175 -14.34655 -14.14122 -13.71699 -13.52846 -13.48926 -13.29862 -12.95446 -12.77328 -12.54249 -12.21395 -11.91381 -11.80033 -11.60311 -11.52652 -11.29162 -10.76573 -10.22004 -9.56954 -9.13364 -8.46575 -6.54567 0.10753 0.60316 1.08092 1.15980 1.31501 1.37184 1.82334 1.97613 2.34811 2.66744 2.94131 3.16379 3.98701 4.31603 4.40408 4.41368 4.53610 4.54559 4.65533 4.79074 4.81403 5.02900 5.08135 5.14131 5.27733 5.33991 5.34899 5.41407 5.55675 5.80423 5.82910 6.26071 6.35226 6.61934 6.72034 6.89767 7.83092 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029255 B = 0.006890 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.860367 B = 4063.056117 C = 4889.750224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.335 6.335 3 C 0.075 3.925 4 C -0.061 4.061 5 C -0.344 4.344 6 C -0.030 4.030 7 C 0.257 3.743 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.010 3.990 11 N -0.824 5.824 12 Si 1.064 2.936 13 H -0.256 1.256 14 H -0.242 1.242 15 H -0.252 1.252 16 N -0.626 5.626 17 H 0.398 0.602 18 C 0.039 3.961 19 C -0.106 4.106 20 C -0.134 4.134 21 C -0.067 4.067 22 Cl -0.069 7.069 23 H 0.112 0.888 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.286 0.714 30 H 0.150 0.850 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 0.935 -11.750 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.030 3.970 4 C -0.066 4.066 5 C -0.348 4.348 6 C -0.087 4.087 7 C 0.149 3.851 8 C -0.555 4.555 9 H 0.095 0.905 10 C -0.207 4.207 11 N -0.447 5.447 12 Si 0.885 3.115 13 H -0.181 1.181 14 H -0.169 1.169 15 H -0.178 1.178 16 N -0.246 5.246 17 H 0.245 0.755 18 C -0.064 4.064 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.095 4.095 22 Cl -0.040 7.040 23 H 0.131 0.869 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.509 2.339 -11.517 11.764 hybrid contribution -0.500 -1.528 0.601 1.717 sum -1.009 0.811 -10.916 10.993 Atomic orbital electron populations 1.23080 0.78764 1.03967 1.00139 1.85929 1.20557 1.24578 1.94152 1.17878 1.02001 0.87788 0.89382 1.18306 1.01060 0.94233 0.93021 1.19358 1.22463 1.02734 0.90267 1.19558 0.97333 0.93267 0.98540 1.18160 0.90475 0.86079 0.90381 1.19898 1.49086 0.96787 0.89747 0.90548 1.28176 0.91757 1.04574 0.96190 1.70548 1.29636 1.34990 1.09511 0.83869 0.78785 0.73218 0.75620 1.18064 1.16851 1.17786 1.43265 1.56201 1.20608 1.04568 0.75550 1.18549 1.05818 0.96318 0.85751 1.20195 1.03254 1.01109 0.88111 1.20537 1.02833 0.93490 0.98454 1.20940 1.07294 0.95892 0.85373 1.98291 1.93127 1.81494 1.31136 0.86944 0.94750 0.93409 0.94551 0.92646 0.94691 0.90287 0.83187 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.13 113.37 1.26 2.30 16 2 O -0.34 -12.69 8.51 -90.86 -0.77 -13.46 16 3 C 0.07 3.00 5.78 22.94 0.13 3.13 16 4 C -0.06 -2.73 6.08 -21.27 -0.13 -2.86 16 5 C -0.34 -16.55 6.26 -19.02 -0.12 -16.67 16 6 C -0.03 -1.28 9.87 71.24 0.70 -0.58 16 7 C 0.26 12.71 6.36 38.75 0.25 12.95 16 8 C -0.52 -26.97 9.39 23.13 0.22 -26.76 16 9 H 0.08 4.17 7.44 -2.91 -0.02 4.15 16 10 C 0.01 0.48 5.52 85.30 0.47 0.95 16 11 N -0.82 -41.76 13.65 21.86 0.30 -41.46 16 12 Si 1.06 40.67 24.95 68.60 1.71 42.38 16 13 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 14 H -0.24 -8.22 6.75 99.48 0.67 -7.55 16 15 H -0.25 -9.26 6.85 99.48 0.68 -8.58 16 16 N -0.63 -27.67 5.00 -180.12 -0.90 -28.57 16 17 H 0.40 15.76 3.16 -92.71 -0.29 15.46 16 18 C 0.04 1.65 7.23 39.00 0.28 1.93 16 19 C -0.11 -3.52 10.05 22.38 0.23 -3.29 16 20 C -0.13 -4.13 9.79 22.37 0.22 -3.91 16 21 C -0.07 -2.32 6.32 22.39 0.14 -2.18 16 22 Cl -0.07 -2.05 28.47 -2.72 -0.08 -2.12 16 23 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 2.26 7.08 -2.39 -0.02 2.24 16 28 H 0.03 1.51 7.43 -2.39 -0.02 1.49 16 29 H 0.29 14.39 8.73 -92.70 -0.81 13.58 16 30 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -56.59 277.59 4.69 -51.90 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.78 Total: 26.32 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 3.65 Total: -34.98 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -0.60 Total: -70.04 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.77 Total: -13.46 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.71 Total: 42.38 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.12 kcal Total: -56.59 4.69 -51.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.492 kcal (2) G-P(sol) polarization free energy of solvation -56.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds