Wall clock time and date at job start Mon Mar 30 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38959 * 119.68261 * 279.99788 * 13 10 9 15 15 C 1.36590 * 120.81204 * 179.97438 * 14 13 10 16 16 C 1.39285 * 119.85055 * 0.02562 * 15 14 13 17 17 N 1.37038 * 133.84143 * 180.02562 * 16 15 14 18 18 H 0.97003 * 125.45169 * 0.02562 * 17 16 15 19 19 N 1.39865 * 109.10508 * 179.97438 * 17 16 15 20 20 C 1.30299 * 110.07675 * 359.97438 * 19 17 16 21 21 Cl 1.73607 * 126.12071 * 180.02562 * 20 19 17 22 22 C 1.40809 * 119.41753 * 0.02562 * 16 15 14 23 23 C 1.36466 * 119.68836 * 99.72410 * 13 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 28 28 H 1.00899 * 111.00294 * 183.95639 * 12 10 9 29 29 H 1.07998 * 119.59772 * 359.97438 * 14 13 10 30 30 H 1.08006 * 120.07405 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.18016 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.3109 -2.3971 -0.9780 15 6 7.6737 -2.3926 -0.8863 16 6 8.2867 -2.6324 0.3412 17 7 9.5918 -2.6940 0.7545 18 1 10.3682 -2.5644 0.1876 19 7 9.6254 -2.9725 2.1248 20 6 8.4128 -3.0872 2.5878 21 17 7.9733 -3.4288 4.2322 22 6 7.4899 -2.8779 1.4760 23 6 6.0956 -2.8706 1.3576 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 4.0322 -2.8162 -2.0400 28 1 3.9070 -4.2684 -1.2392 29 1 5.8400 -2.2111 -1.9320 30 1 8.2746 -2.2043 -1.7637 31 1 5.4762 -3.0531 2.2232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260132704.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:27 Heat of formation + Delta-G solvation = 54.764631 kcal Electronic energy + Delta-G solvation = -17051.727798 eV Core-core repulsion = 14166.046096 eV Total energy + Delta-G solvation = -2885.681702 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.43164 -39.38199 -37.96049 -36.20679 -34.37572 -33.33123 -31.13385 -30.61243 -30.20061 -25.92272 -24.21845 -23.36059 -22.84835 -21.18356 -19.04148 -18.87117 -17.65035 -17.05346 -16.39673 -16.29317 -16.13832 -15.86813 -15.42238 -14.85918 -14.78299 -14.22838 -13.59514 -13.54664 -13.28576 -13.00160 -12.92707 -12.78620 -12.36079 -11.99816 -11.79970 -11.70567 -11.68592 -11.23016 -11.04131 -10.65765 -9.82848 -9.36633 -8.94289 -8.15316 -6.14770 -0.23306 0.29863 0.36501 1.12693 1.38845 1.41624 1.51842 1.85037 2.43835 2.66389 3.19080 3.31423 3.59714 3.84471 3.96052 3.98080 4.28311 4.36564 4.45240 4.68420 4.92544 4.94224 5.04369 5.21123 5.32412 5.44157 5.64726 5.74118 5.77924 6.11522 6.33628 6.42269 6.59668 6.89714 6.95552 7.46390 9.01990 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.005131 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.047830 B = 5455.456450 C = 5804.743675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.001 4.001 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.493 4.493 8 H 0.039 0.961 9 C 0.003 3.997 10 C 0.157 3.843 11 H 0.068 0.932 12 N -0.833 5.833 13 C -0.143 4.143 14 C -0.062 4.062 15 C -0.126 4.126 16 C 0.126 3.874 17 N -0.482 5.482 18 H 0.460 0.540 19 N -0.248 5.248 20 C 0.131 3.869 21 Cl 0.029 6.971 22 C -0.181 4.181 23 C -0.043 4.043 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.016 0.984 27 H 0.342 0.658 28 H 0.342 0.658 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.948 -6.091 0.100 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.196 4.196 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.174 1.174 7 C -0.532 4.532 8 H 0.057 0.943 9 C -0.035 4.035 10 C 0.045 3.955 11 H 0.086 0.914 12 N -0.363 5.363 13 C -0.147 4.147 14 C -0.083 4.083 15 C -0.147 4.147 16 C 0.010 3.990 17 N -0.203 5.203 18 H 0.309 0.691 19 N -0.067 5.067 20 C -0.071 4.071 21 Cl 0.057 6.943 22 C -0.190 4.190 23 C -0.064 4.064 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.184 0.816 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 22.261 -5.881 0.737 23.036 hybrid contribution 0.294 0.679 -0.143 0.754 sum 22.555 -5.202 0.594 23.154 Atomic orbital electron populations 1.70076 1.08175 1.27489 1.54217 1.25912 0.95451 1.02925 0.95299 0.85802 0.79423 0.79286 0.78939 1.19305 1.21693 1.17449 1.21315 0.91504 0.92877 1.47454 0.94275 1.19541 0.94382 0.93266 0.96278 1.20104 0.86548 0.95787 0.93088 0.91379 1.58683 1.67853 1.06261 1.03480 1.20631 0.97925 1.02333 0.93825 1.20857 0.92943 0.95521 0.98971 1.20090 0.94416 1.05359 0.94853 1.18929 0.84972 0.99636 0.95437 1.45639 1.06106 1.63997 1.04539 0.69050 1.76429 1.19670 1.18223 0.92377 1.23888 0.91070 1.03249 0.88920 1.98410 1.91294 1.92953 1.11658 1.19607 0.94616 1.13137 0.91604 1.20306 0.91578 0.96606 0.97957 0.93014 0.96230 0.96548 0.84321 0.84445 0.83520 0.81630 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.69 13.96 21.45 0.30 -60.39 16 2 C 0.00 -0.05 5.47 84.66 0.46 0.42 16 3 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.49 -27.90 9.39 25.60 0.24 -27.66 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C 0.00 0.14 3.67 29.85 0.11 0.24 16 10 C 0.16 5.62 2.91 44.17 0.13 5.75 16 11 H 0.07 2.63 7.97 -2.38 -0.02 2.61 16 12 N -0.83 -27.31 8.77 -171.80 -1.51 -28.81 16 13 C -0.14 -4.15 4.91 -20.11 -0.10 -4.24 16 14 C -0.06 -1.44 9.21 22.06 0.20 -1.24 16 15 C -0.13 -2.41 10.03 22.14 0.22 -2.19 16 16 C 0.13 2.84 7.33 39.21 0.29 3.12 16 17 N -0.48 -9.37 7.37 -51.54 -0.38 -9.75 16 18 H 0.46 5.31 8.96 -213.47 -1.91 3.40 16 19 N -0.25 -6.07 12.55 -45.94 -0.58 -6.64 16 20 C 0.13 3.39 8.09 86.93 0.70 4.09 16 21 Cl 0.03 0.66 29.33 -2.72 -0.08 0.58 16 22 C -0.18 -4.86 6.37 -20.23 -0.13 -4.99 16 23 C -0.04 -1.24 9.66 22.26 0.22 -1.03 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 25 H 0.02 0.84 7.58 -2.38 -0.02 0.82 16 26 H 0.02 0.74 7.19 -2.39 -0.02 0.73 16 27 H 0.34 9.89 7.31 -89.69 -0.66 9.23 16 28 H 0.34 9.25 9.06 -89.69 -0.81 8.44 16 29 H 0.15 2.91 6.62 -2.91 -0.02 2.90 16 30 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.13 3.64 8.01 -2.91 -0.02 3.62 16 Total: -1.00 -70.08 284.30 -0.25 -70.32 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -2.23 Total: 16.06 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.35 Total: -27.71 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -2.16 Total: -105.59 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.08 Total: 0.58 kcal Total: -70.08 -0.25 -70.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132704.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.086 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds