Wall clock time and date at job start Mon Mar 30 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47121 * 240.00391 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47085 * 120.00286 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 N 1.46896 * 109.46848 * 294.99917 * 10 9 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 10 9 7 14 14 C 1.38964 * 119.68533 * 79.72630 * 13 10 9 15 15 C 1.36588 * 120.81270 * 179.73380 * 14 13 10 16 16 C 1.39293 * 119.85050 * 0.55968 * 15 14 13 17 17 N 1.37039 * 133.84211 * 179.72889 * 16 15 14 18 18 H 0.97000 * 125.44318 * 359.95626 * 17 16 15 19 19 N 1.39865 * 109.10124 * 179.97438 * 17 16 15 20 20 C 1.30306 * 110.08108 * 359.97438 * 19 17 16 21 21 Cl 1.73594 * 126.12082 * 180.02562 * 20 19 17 22 22 C 1.40811 * 119.41333 * 359.69942 * 16 15 14 23 23 C 1.36465 * 119.68801 * 259.99839 * 13 10 9 24 24 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 26 26 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 27 27 H 1.00900 * 111.00550 * 299.99950 * 12 10 9 28 28 H 1.00896 * 111.00310 * 63.95536 * 12 10 9 29 29 H 1.08005 * 119.59167 * 359.97438 * 14 13 10 30 30 H 1.08003 * 120.07523 * 180.28040 * 15 14 13 31 31 H 1.08000 * 120.18437 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0082 -3.6539 -1.2558 13 6 1.4958 -4.9637 0.1233 14 6 0.8886 -5.5175 -0.9972 15 6 0.2081 -6.6988 -0.9123 16 6 0.1085 -7.3550 0.3123 17 7 -0.4904 -8.5183 0.7199 18 1 -0.9902 -9.1234 0.1498 19 7 -0.2663 -8.6930 2.0894 20 6 0.4399 -7.7028 2.5571 21 17 0.9565 -7.5015 4.2021 22 6 0.7187 -6.7926 1.4499 23 6 1.4151 -5.5844 1.3359 24 1 -0.4849 0.8402 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.3960 -3.7517 -2.0518 28 1 3.5700 -2.8193 -1.3320 29 1 0.9588 -5.0095 -1.9478 30 1 -0.2555 -7.1208 -1.7918 31 1 1.8857 -5.1451 2.2032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:29 Heat of formation + Delta-G solvation = 68.483484 kcal Electronic energy + Delta-G solvation = -16981.951419 eV Core-core repulsion = 14096.864611 eV Total energy + Delta-G solvation = -2885.086808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23283 -37.96682 -36.86544 -34.81350 -32.48268 -32.09600 -29.84694 -29.10720 -27.90872 -24.40141 -23.00920 -22.10607 -21.66040 -19.76618 -17.83693 -16.80884 -16.34858 -15.46995 -15.18965 -15.10450 -14.62897 -14.17404 -13.75394 -13.53357 -12.89691 -12.48376 -12.31778 -12.12955 -11.85298 -11.63305 -11.36076 -11.17411 -10.88661 -10.67020 -10.61130 -10.25966 -10.01355 -9.81388 -9.21061 -8.56528 -8.48257 -7.99594 -7.54696 -6.09709 -4.14511 0.98347 1.39095 1.67200 2.32349 2.92961 3.27265 3.32806 3.34486 3.96304 4.37489 4.49973 4.76101 5.10415 5.14495 5.25875 5.45289 5.61542 5.68596 5.83761 6.06755 6.23737 6.35091 6.55485 6.67669 6.93228 7.01102 7.23018 7.38029 7.44957 7.55348 7.83665 8.01804 8.18353 8.30419 8.92097 9.50926 11.00794 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.004659 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.522830 B = 6007.808013 C = 6550.028514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.128 3.872 11 H 0.078 0.922 12 N -0.840 5.840 13 C -0.076 4.076 14 C -0.042 4.042 15 C -0.146 4.146 16 C 0.125 3.875 17 N -0.500 5.500 18 H 0.443 0.557 19 N -0.242 5.242 20 C 0.143 3.857 21 Cl 0.017 6.983 22 C -0.162 4.162 23 C -0.041 4.041 24 H 0.262 0.738 25 H 0.017 0.983 26 H 0.021 0.979 27 H 0.328 0.672 28 H 0.347 0.653 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -14.563 0.701 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.017 3.983 11 H 0.096 0.904 12 N -0.369 5.369 13 C -0.078 4.078 14 C -0.062 4.062 15 C -0.168 4.168 16 C 0.010 3.990 17 N -0.218 5.218 18 H 0.288 0.712 19 N -0.061 5.061 20 C -0.059 4.059 21 Cl 0.045 6.955 22 C -0.170 4.170 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.139 0.861 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.123 -16.168 1.433 16.232 hybrid contribution -0.169 2.225 -0.483 2.283 sum -0.045 -13.943 0.950 13.975 Atomic orbital electron populations 1.69961 1.06116 1.26882 1.49977 1.25006 0.94806 0.99290 0.95024 0.86651 0.79571 0.83062 0.78685 1.20186 1.21330 1.20169 1.21113 0.92872 0.90800 1.51723 0.92518 1.19810 0.94434 0.91659 0.97941 1.20519 0.94527 0.90235 0.93057 0.90380 1.59266 1.27922 1.45958 1.03724 1.19713 0.98627 0.97150 0.92340 1.20641 0.93304 0.93263 0.99033 1.19751 1.05601 0.97302 0.94157 1.18689 0.96514 0.88387 0.95368 1.45562 1.50254 1.20956 1.05055 0.71201 1.76426 1.17211 1.21025 0.91447 1.23718 0.99685 0.94361 0.88182 1.98400 1.88169 1.96377 1.12553 1.19381 1.07971 0.99036 0.90588 1.20186 0.96394 0.91575 0.98016 0.92834 0.96436 0.96106 0.86086 0.83900 0.85113 0.85598 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -13.77 8.55 -34.44 -0.29 -14.06 16 8 H 0.06 1.42 7.15 -52.48 -0.37 1.05 16 9 C 0.00 0.00 4.60 -27.89 -0.13 -0.13 16 10 C 0.13 2.45 2.97 -68.87 -0.20 2.25 16 11 H 0.08 1.54 7.97 -51.93 -0.41 1.12 16 12 N -0.84 -14.62 9.02 -5.66 -0.05 -14.68 16 13 C -0.08 -1.31 4.92 -104.99 -0.52 -1.83 16 14 C -0.04 -0.63 9.21 -39.91 -0.37 -1.00 16 15 C -0.15 -1.95 10.03 -39.79 -0.40 -2.35 16 16 C 0.12 1.79 7.34 -84.17 -0.62 1.17 16 17 N -0.50 -6.27 7.37 32.36 0.24 -6.04 16 18 H 0.44 3.88 8.96 -182.77 -1.64 2.24 16 19 N -0.24 -3.51 12.55 34.13 0.43 -3.08 16 20 C 0.14 2.14 8.09 -15.09 -0.12 2.01 16 21 Cl 0.02 0.22 29.33 -51.86 -1.52 -1.30 16 22 C -0.16 -2.56 6.37 -105.18 -0.67 -3.23 16 23 C -0.04 -0.67 9.66 -39.59 -0.38 -1.06 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.33 5.33 7.32 -39.29 -0.29 5.05 16 28 H 0.35 6.23 7.90 -39.29 -0.31 5.92 16 29 H 0.13 1.82 6.63 -52.48 -0.35 1.47 16 30 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.13 2.02 8.01 -52.49 -0.42 1.60 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -29.69 286.19 -8.87 -38.56 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.20 Total: 8.18 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.80 Total: -16.65 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 1.35 Total: -48.85 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.52 Total: -1.30 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.69 -8.87 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.044 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds