Wall clock time and date at job start Mon Mar 30 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47121 * 240.00391 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47085 * 120.00286 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 N 1.46896 * 109.46848 * 294.99917 * 10 9 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 10 9 7 14 14 C 1.38964 * 119.68533 * 79.72630 * 13 10 9 15 15 C 1.36588 * 120.81270 * 179.73380 * 14 13 10 16 16 C 1.39293 * 119.85050 * 0.55968 * 15 14 13 17 17 N 1.37039 * 133.84211 * 179.72889 * 16 15 14 18 18 H 0.97000 * 125.44318 * 359.95626 * 17 16 15 19 19 N 1.39865 * 109.10124 * 179.97438 * 17 16 15 20 20 C 1.30306 * 110.08108 * 359.97438 * 19 17 16 21 21 Cl 1.73594 * 126.12082 * 180.02562 * 20 19 17 22 22 C 1.40811 * 119.41333 * 359.69942 * 16 15 14 23 23 C 1.36465 * 119.68801 * 259.99839 * 13 10 9 24 24 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 26 26 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 27 27 H 1.00900 * 111.00550 * 299.99950 * 12 10 9 28 28 H 1.00896 * 111.00310 * 63.95536 * 12 10 9 29 29 H 1.08005 * 119.59167 * 359.97438 * 14 13 10 30 30 H 1.08003 * 120.07523 * 180.28040 * 15 14 13 31 31 H 1.08000 * 120.18437 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0082 -3.6539 -1.2558 13 6 1.4958 -4.9637 0.1233 14 6 0.8886 -5.5175 -0.9972 15 6 0.2081 -6.6988 -0.9123 16 6 0.1085 -7.3550 0.3123 17 7 -0.4904 -8.5183 0.7199 18 1 -0.9902 -9.1234 0.1498 19 7 -0.2663 -8.6930 2.0894 20 6 0.4399 -7.7028 2.5571 21 17 0.9565 -7.5015 4.2021 22 6 0.7187 -6.7926 1.4499 23 6 1.4151 -5.5844 1.3359 24 1 -0.4849 0.8402 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.3960 -3.7517 -2.0518 28 1 3.5700 -2.8193 -1.3320 29 1 0.9588 -5.0095 -1.9478 30 1 -0.2555 -7.1208 -1.7918 31 1 1.8857 -5.1451 2.2032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260132719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:29 Heat of formation + Delta-G solvation = 48.691782 kcal Electronic energy + Delta-G solvation = -16982.809652 eV Core-core repulsion = 14096.864611 eV Total energy + Delta-G solvation = -2885.945040 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.36572 -39.26589 -37.93071 -36.34271 -34.37242 -33.28708 -31.00346 -30.35584 -29.75796 -26.12316 -24.17590 -23.61703 -22.84314 -21.20098 -18.96218 -18.69097 -17.54566 -17.00663 -16.58324 -16.30847 -16.20772 -15.45825 -15.06330 -14.74840 -14.52370 -14.14048 -13.95480 -13.46334 -13.12478 -12.94999 -12.86026 -12.58396 -12.53336 -12.32047 -11.92716 -11.82091 -11.67272 -11.14260 -11.02172 -10.56252 -9.74674 -9.40389 -8.85256 -8.17634 -6.29216 -0.17191 0.33013 0.45757 1.18087 1.43373 1.44894 1.52381 1.89228 2.42047 2.75611 3.15900 3.35507 3.64704 3.83769 4.01948 4.23689 4.34616 4.41312 4.52484 4.80817 4.93901 5.01149 5.10476 5.30430 5.46102 5.53189 5.72616 5.79744 5.84093 6.16323 6.20822 6.38800 6.46894 6.79974 6.87723 7.40739 8.92882 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.004659 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.522830 B = 6007.808013 C = 6550.028514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.010 3.990 10 C 0.143 3.857 11 H 0.070 0.930 12 N -0.828 5.828 13 C -0.096 4.096 14 C -0.054 4.054 15 C -0.130 4.130 16 C 0.124 3.876 17 N -0.482 5.482 18 H 0.460 0.540 19 N -0.247 5.247 20 C 0.132 3.868 21 Cl 0.029 6.971 22 C -0.181 4.181 23 C -0.051 4.051 24 H 0.261 0.739 25 H -0.002 1.002 26 H -0.014 1.014 27 H 0.336 0.664 28 H 0.345 0.655 29 H 0.142 0.858 30 H 0.165 0.835 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 -15.446 -0.133 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.084 0.916 9 C -0.029 4.029 10 C 0.031 3.969 11 H 0.088 0.912 12 N -0.356 5.356 13 C -0.098 4.098 14 C -0.075 4.075 15 C -0.152 4.152 16 C 0.008 3.992 17 N -0.203 5.203 18 H 0.309 0.691 19 N -0.067 5.067 20 C -0.070 4.070 21 Cl 0.057 6.943 22 C -0.189 4.189 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.016 0.984 26 H 0.004 0.996 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.589 -17.088 0.585 17.108 hybrid contribution -0.351 2.404 -0.206 2.438 sum 0.237 -14.684 0.379 14.690 Atomic orbital electron populations 1.70104 1.07840 1.27647 1.51597 1.25892 0.95563 1.03110 0.94824 0.85572 0.78225 0.78477 0.79191 1.18838 1.21556 1.19545 1.21553 0.93531 0.91744 1.50460 0.91567 1.19687 0.94629 0.93354 0.95196 1.20187 0.93296 0.89780 0.93602 0.91199 1.59253 1.27511 1.45526 1.03358 1.19588 0.99931 0.96728 0.93598 1.20799 0.93699 0.94170 0.98784 1.20072 1.04001 0.96078 0.95013 1.18879 0.96151 0.88752 0.95380 1.45592 1.49514 1.20590 1.04617 0.69077 1.76396 1.17041 1.20909 0.92323 1.23837 1.00039 0.94321 0.88837 1.98399 1.88046 1.96347 1.11516 1.19550 1.08505 0.99131 0.91758 1.20207 0.96928 0.92202 0.97846 0.92981 0.98415 0.99599 0.85164 0.84174 0.84059 0.81713 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.44 0.28 -54.73 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.53 -28.16 8.55 25.60 0.22 -27.94 16 8 H 0.07 3.29 7.15 -2.91 -0.02 3.27 16 9 C 0.01 0.49 4.60 29.85 0.14 0.63 16 10 C 0.14 5.54 2.97 44.17 0.13 5.67 16 11 H 0.07 2.79 7.97 -2.39 -0.02 2.77 16 12 N -0.83 -28.24 9.02 -171.81 -1.55 -29.79 16 13 C -0.10 -3.31 4.92 -20.10 -0.10 -3.41 16 14 C -0.05 -1.56 9.21 22.06 0.20 -1.35 16 15 C -0.13 -3.13 10.03 22.14 0.22 -2.90 16 16 C 0.12 3.29 7.34 39.21 0.29 3.58 16 17 N -0.48 -10.91 7.37 -51.53 -0.38 -11.29 16 18 H 0.46 6.65 8.96 -213.47 -1.91 4.74 16 19 N -0.25 -6.74 12.55 -45.94 -0.58 -7.32 16 20 C 0.13 3.81 8.09 86.93 0.70 4.51 16 21 Cl 0.03 0.73 29.33 -2.72 -0.08 0.65 16 22 C -0.18 -5.58 6.37 -20.23 -0.13 -5.71 16 23 C -0.05 -1.69 9.66 22.26 0.22 -1.48 16 24 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 27 H 0.34 10.60 7.32 -89.69 -0.66 9.95 16 28 H 0.35 12.08 7.90 -89.70 -0.71 11.37 16 29 H 0.14 3.71 6.63 -2.91 -0.02 3.69 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 4.12 8.01 -2.91 -0.02 4.09 16 Total: -1.00 -63.60 286.19 0.01 -63.59 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -2.07 Total: 21.98 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.35 Total: -27.70 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -2.22 Total: -103.12 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -63.60 0.01 -63.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.284 kcal (2) G-P(sol) polarization free energy of solvation -63.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds