Wall clock time and date at job start Mon Mar 30 2020 06:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39872 * 125.44526 * 2 1 4 4 C 1.30299 * 110.08497 * 180.26668 * 3 2 1 5 5 Cl 1.73600 * 126.11687 * 179.97438 * 4 3 2 6 6 C 1.46009 * 107.76579 * 0.02562 * 4 3 2 7 7 C 1.37045 * 125.45167 * 180.31876 * 2 1 3 8 8 C 1.39247 * 133.84167 * 359.72831 * 7 2 1 9 9 C 1.36628 * 119.84953 * 180.02562 * 8 7 2 10 10 C 1.38925 * 120.81035 * 0.02562 * 9 8 7 11 11 C 1.36502 * 120.63020 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.18419 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47021 * 144.99851 * 12 11 10 14 14 N 1.46897 * 109.47138 * 24.99549 * 12 11 10 15 15 C 1.50705 * 109.46761 * 264.99511 * 12 11 10 16 16 H 1.07994 * 120.00286 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99447 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99296 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 120.00409 * 359.97438 * 17 15 12 20 20 H 1.48499 * 109.46849 * 90.00084 * 19 17 15 21 21 H 1.48503 * 109.46919 * 210.00289 * 19 17 15 22 22 H 1.48493 * 109.46914 * 330.00247 * 19 17 15 23 23 H 1.09008 * 109.46974 * 269.68398 * 1 2 3 24 24 H 1.08996 * 109.47643 * 29.68499 * 1 2 3 25 25 H 1.09002 * 109.47287 * 149.69427 * 1 2 3 26 26 H 1.07995 * 120.07569 * 359.97438 * 8 7 2 27 27 H 1.07996 * 119.59751 * 180.02562 * 9 8 7 28 28 H 1.08001 * 119.68684 * 179.97438 * 10 9 8 29 29 H 1.00902 * 111.00211 * 300.00054 * 14 12 11 30 30 H 1.00904 * 111.00074 * 63.95414 * 14 12 11 31 31 H 0.96998 * 119.99659 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2761 1.1395 0.0000 4 6 3.5326 0.7944 -0.0057 5 17 4.8907 1.8756 -0.0086 6 6 3.5939 -0.6644 -0.0105 7 6 2.2599 -1.1164 -0.0062 8 6 2.0012 -2.4846 -0.0091 9 6 3.0392 -3.3729 -0.0150 10 6 4.3557 -2.9290 -0.0178 11 6 4.6394 -1.5938 -0.0151 12 6 6.0711 -1.1234 -0.0176 13 1 6.1520 -0.2088 -0.6049 14 7 6.9266 -2.1616 -0.6076 15 6 6.5132 -0.8525 1.3975 16 1 5.8263 -1.0060 2.2166 17 6 7.7950 -0.4096 1.6463 18 7 8.1809 -0.1737 2.8812 19 14 8.9838 -0.1461 0.2297 20 1 8.8638 1.2492 -0.2641 21 1 10.3723 -0.3882 0.6973 22 1 8.6601 -1.0900 -0.8700 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3634 0.8927 -0.5089 25 1 -0.3634 -0.8872 -0.5186 26 1 0.9824 -2.8428 -0.0057 27 1 2.8340 -4.4332 -0.0177 28 1 5.1623 -3.6472 -0.0221 29 1 6.8691 -3.0202 -0.0807 30 1 6.6920 -2.3158 -1.5768 31 1 9.0825 0.1382 3.0563 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:46 Heat of formation + Delta-G solvation = 76.700419 kcal Electronic energy + Delta-G solvation = -17831.674840 eV Core-core repulsion = 14946.944345 eV Total energy + Delta-G solvation = -2884.730495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.32632 -38.88151 -37.85044 -36.23364 -34.25087 -33.72614 -31.03977 -30.58265 -28.26082 -27.26204 -24.65372 -23.23664 -22.80919 -20.68802 -18.90943 -18.12525 -17.93060 -16.71924 -16.55847 -16.30806 -16.00801 -15.81456 -15.08560 -14.81555 -14.30657 -14.20988 -13.72372 -13.52490 -13.36725 -13.04379 -12.70865 -12.68591 -12.49248 -12.34380 -11.92860 -11.82324 -11.42837 -11.27357 -10.65762 -10.58045 -9.64304 -8.91570 -8.69027 -8.15455 -6.25259 -0.08153 0.40796 0.54878 1.25175 1.52521 1.59680 1.79562 1.95780 2.65550 2.84410 3.23593 3.44010 3.64725 3.97684 4.12639 4.26346 4.40467 4.41283 4.46527 4.54234 4.65819 4.82627 4.93568 5.11388 5.21205 5.50159 5.56473 5.81562 5.86691 6.09819 6.22854 6.36923 6.57607 6.86943 7.10506 7.50698 8.98337 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.008371 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.410393 B = 3344.070662 C = 4097.162996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.400 5.400 3 N -0.268 5.268 4 C 0.132 3.868 5 Cl 0.019 6.981 6 C -0.193 4.193 7 C 0.123 3.877 8 C -0.153 4.153 9 C -0.049 4.049 10 C -0.176 4.176 11 C -0.015 4.015 12 C 0.220 3.780 13 H 0.047 0.953 14 N -0.836 5.836 15 C -0.487 4.487 16 H 0.019 0.981 17 C 0.036 3.964 18 N -0.952 5.952 19 Si 0.907 3.093 20 H -0.305 1.305 21 H -0.316 1.316 22 H -0.150 1.150 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.137 0.863 29 H 0.339 0.661 30 H 0.332 0.668 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.530 -5.934 -10.316 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.192 5.192 3 N -0.086 5.086 4 C -0.069 4.069 5 Cl 0.047 6.953 6 C -0.202 4.202 7 C 0.009 3.991 8 C -0.175 4.175 9 C -0.070 4.070 10 C -0.196 4.196 11 C -0.020 4.020 12 C 0.110 3.890 13 H 0.064 0.936 14 N -0.368 5.368 15 C -0.525 4.525 16 H 0.037 0.963 17 C -0.162 4.162 18 N -0.592 5.592 19 Si 0.733 3.267 20 H -0.234 1.234 21 H -0.245 1.245 22 H -0.070 1.070 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.182 0.818 27 H 0.187 0.813 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.694 -4.326 -10.070 19.142 hybrid contribution 0.716 -0.037 0.248 0.758 sum -14.978 -4.364 -9.822 18.435 Atomic orbital electron populations 1.22205 0.70710 1.06233 1.04498 1.48310 1.06875 0.99493 1.64490 1.76383 1.00822 1.10569 1.20869 1.23931 0.89286 0.90394 1.03265 1.98415 1.37527 1.62855 1.96529 1.19625 0.94740 0.90710 1.15140 1.19157 0.88963 0.91050 0.99943 1.20124 1.01885 0.86843 1.08636 1.21143 0.90793 1.01164 0.93852 1.20788 0.98451 0.94082 1.06291 1.20478 0.96300 0.93401 0.91824 1.18348 0.84025 0.92176 0.94438 0.93573 1.59695 1.58097 1.12926 1.06080 1.20599 0.97060 1.44329 0.90550 0.96270 1.25660 0.99869 0.93196 0.97513 1.70097 1.19170 1.47829 1.22142 0.86656 0.75659 0.79157 0.85241 1.23356 1.24461 1.06977 0.90022 0.88510 0.86423 0.81796 0.81271 0.84509 0.84537 0.85496 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 11.40 127.77 1.46 3.19 16 2 N -0.40 -12.13 4.05 -361.04 -1.46 -13.59 16 3 N -0.27 -10.08 12.40 -45.94 -0.57 -10.65 16 4 C 0.13 5.50 8.05 86.94 0.70 6.20 16 5 Cl 0.02 0.80 27.16 -2.72 -0.07 0.73 16 6 C -0.19 -7.75 6.15 -20.23 -0.12 -7.87 16 7 C 0.12 3.99 6.87 39.21 0.27 4.25 16 8 C -0.15 -3.68 9.97 22.14 0.22 -3.46 16 9 C -0.05 -1.17 9.96 22.06 0.22 -0.95 16 10 C -0.18 -5.55 9.22 22.03 0.20 -5.34 16 11 C -0.02 -0.61 4.98 -19.87 -0.10 -0.71 16 12 C 0.22 9.82 1.90 43.43 0.08 9.91 16 13 H 0.05 2.17 5.75 -2.39 -0.01 2.15 16 14 N -0.84 -31.55 5.42 -174.95 -0.95 -32.50 16 15 C -0.49 -27.26 9.29 25.60 0.24 -27.02 16 16 H 0.02 1.23 7.98 -2.91 -0.02 1.21 16 17 C 0.04 2.10 5.47 84.65 0.46 2.56 16 18 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 19 Si 0.91 44.80 26.94 68.60 1.85 46.65 16 20 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 21 H -0.32 -16.15 7.11 99.48 0.71 -15.44 16 22 H -0.15 -6.40 5.16 99.48 0.51 -5.88 16 23 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 27 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.14 3.85 6.25 -2.91 -0.02 3.83 16 29 H 0.34 12.04 7.20 -89.69 -0.65 11.39 16 30 H 0.33 10.35 9.06 -89.69 -0.81 9.54 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -75.66 277.65 2.26 -73.40 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.46 Total: 15.87 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.63 Total: -19.25 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -2.68 Total: -117.39 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.85 Total: 46.65 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.07 Total: 0.73 kcal Total: -75.66 2.26 -73.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.101 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds