Wall clock time and date at job start Mon Mar 30 2020 06:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39869 * 125.44912 * 2 1 4 4 C 1.30300 * 110.08871 * 179.73003 * 3 2 1 5 5 Cl 1.73604 * 126.11726 * 180.02562 * 4 3 2 6 6 C 1.46013 * 107.76533 * 0.37767 * 4 3 2 7 7 C 1.37050 * 125.44915 * 179.97438 * 2 1 3 8 8 C 1.39245 * 133.85229 * 359.97438 * 7 2 1 9 9 C 1.36626 * 119.85245 * 180.02562 * 8 7 2 10 10 C 1.38923 * 120.81670 * 0.02562 * 9 8 7 11 11 C 1.36504 * 120.62210 * 359.96354 * 10 9 8 12 12 C 1.50703 * 120.17944 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46750 * 219.99442 * 12 11 10 14 14 N 1.46895 * 109.47052 * 339.99281 * 12 11 10 15 15 C 1.50698 * 109.47105 * 99.99269 * 12 11 10 16 16 H 1.07996 * 120.00498 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99740 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99913 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47074 * 89.99958 * 19 17 15 21 21 H 1.48501 * 109.47009 * 210.00072 * 19 17 15 22 22 H 1.48498 * 109.47105 * 330.00198 * 19 17 15 23 23 H 1.09002 * 109.46771 * 270.02421 * 1 2 3 24 24 H 1.08996 * 109.47289 * 30.02076 * 1 2 3 25 25 H 1.09000 * 109.47070 * 150.02522 * 1 2 3 26 26 H 1.08005 * 120.07131 * 0.02562 * 8 7 2 27 27 H 1.07999 * 119.59129 * 180.02562 * 9 8 7 28 28 H 1.07998 * 119.68782 * 179.97438 * 10 9 8 29 29 H 1.00898 * 111.00047 * 296.04625 * 14 12 11 30 30 H 1.00896 * 111.00013 * 59.99788 * 14 12 11 31 31 H 0.97001 * 120.00098 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5326 0.7943 0.0058 5 17 4.8908 1.8755 0.0087 6 6 3.5939 -0.6646 0.0008 7 6 2.2598 -1.1164 0.0005 8 6 2.0013 -2.4847 0.0016 9 6 3.0395 -3.3729 0.0023 10 6 4.3559 -2.9291 0.0026 11 6 4.6395 -1.5938 0.0014 12 6 6.0712 -1.1234 0.0011 13 1 6.1704 -0.2614 0.6608 14 7 6.9425 -2.2064 0.4761 15 6 6.4716 -0.7337 -1.3984 16 1 5.7605 -0.8178 -2.2068 17 6 7.7457 -0.2688 -1.6467 18 7 8.6113 -0.1649 -0.6620 19 14 8.2419 0.2150 -3.3814 20 1 7.9425 1.6531 -3.5990 21 1 9.6966 -0.0210 -3.5641 22 1 7.4810 -0.6026 -4.3601 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 0.9824 -2.8430 0.0018 27 1 2.8341 -4.4332 0.0027 28 1 5.1625 -3.6472 0.0037 29 1 6.7365 -2.4419 1.4353 30 1 6.8684 -3.0176 -0.1193 31 1 9.5077 0.1619 -0.8367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260138383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:48 Heat of formation + Delta-G solvation = 94.653377 kcal Electronic energy + Delta-G solvation = -17799.701531 eV Core-core repulsion = 14915.749535 eV Total energy + Delta-G solvation = -2883.951996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91302 -37.33491 -36.18988 -34.41997 -32.83223 -31.53561 -29.60724 -28.96966 -26.29558 -25.80058 -23.08577 -21.85036 -21.26720 -19.26121 -16.76134 -16.61144 -16.30382 -15.35124 -14.96331 -14.59300 -14.32138 -14.22141 -13.53369 -13.15529 -13.05423 -12.63137 -12.34120 -11.89676 -11.71091 -11.37285 -11.08220 -10.97666 -10.83186 -10.68844 -10.51942 -10.01948 -9.65630 -9.39622 -8.93838 -8.38605 -8.19077 -7.35824 -7.07957 -5.82151 -3.95160 1.34634 1.89783 1.95209 2.71855 3.11112 3.37385 3.44253 3.47782 4.24174 4.55870 4.70797 4.89095 5.17903 5.23102 5.40669 5.41665 5.42691 5.58549 5.78451 5.86051 6.15920 6.29483 6.44848 6.57903 6.88017 7.00420 7.20694 7.39698 7.53317 7.80253 7.95923 8.23257 8.65515 9.02008 9.17846 9.71975 11.22272 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008186 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.808823 B = 3419.694018 C = 4105.289447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.411 5.411 3 N -0.263 5.263 4 C 0.164 3.836 5 Cl 0.045 6.955 6 C -0.161 4.161 7 C 0.134 3.866 8 C -0.177 4.177 9 C -0.054 4.054 10 C -0.187 4.187 11 C 0.018 3.982 12 C 0.247 3.753 13 H 0.063 0.937 14 N -0.810 5.810 15 C -0.515 4.515 16 H 0.051 0.949 17 C 0.090 3.910 18 N -0.845 5.845 19 Si 0.876 3.124 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.299 0.701 30 H 0.319 0.681 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 -2.805 2.701 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.201 5.201 3 N -0.080 5.080 4 C -0.039 4.039 5 Cl 0.073 6.927 6 C -0.170 4.170 7 C 0.020 3.980 8 C -0.199 4.199 9 C -0.074 4.074 10 C -0.207 4.207 11 C 0.013 3.987 12 C 0.137 3.863 13 H 0.080 0.920 14 N -0.336 5.336 15 C -0.554 4.554 16 H 0.069 0.931 17 C -0.117 4.117 18 N -0.480 5.480 19 Si 0.703 3.297 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.244 -1.151 2.621 13.550 hybrid contribution -0.160 -0.796 -0.968 1.264 sum -13.405 -1.947 1.652 13.646 Atomic orbital electron populations 1.21645 0.74310 1.03866 1.02550 1.47807 1.05184 1.00670 1.66466 1.76495 1.01031 1.08709 1.21810 1.23961 0.89202 0.90324 1.00374 1.98457 1.35900 1.62195 1.96193 1.19366 0.92832 0.90935 1.13889 1.18799 0.90054 0.89537 0.99575 1.19509 0.99342 0.88587 1.12495 1.20654 0.92460 0.98654 0.95680 1.20528 0.96181 0.95537 1.08442 1.21265 0.99213 0.91690 0.86539 1.18414 0.78999 0.91212 0.97713 0.91961 1.59182 1.59828 1.11491 1.03098 1.20587 0.97514 1.45614 0.91716 0.93107 1.24827 0.96462 0.94646 0.95777 1.70091 1.04573 1.43062 1.30281 0.86879 0.77706 0.78955 0.86118 1.20731 1.21286 1.20032 0.91648 0.89745 0.89981 0.86555 0.86073 0.85823 0.89049 0.86814 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.27 11.40 59.85 0.68 1.96 16 2 N -0.41 -6.89 4.05 -65.47 -0.27 -7.15 16 3 N -0.26 -5.09 12.40 34.13 0.42 -4.67 16 4 C 0.16 3.41 8.06 -15.09 -0.12 3.29 16 5 Cl 0.04 0.93 26.91 -51.86 -1.40 -0.47 16 6 C -0.16 -3.38 6.15 -105.18 -0.65 -4.02 16 7 C 0.13 2.41 6.87 -84.17 -0.58 1.84 16 8 C -0.18 -2.69 9.97 -39.79 -0.40 -3.08 16 9 C -0.05 -0.81 9.96 -39.91 -0.40 -1.21 16 10 C -0.19 -3.36 9.20 -39.95 -0.37 -3.73 16 11 C 0.02 0.38 5.01 -104.63 -0.52 -0.15 16 12 C 0.25 5.89 2.29 -70.02 -0.16 5.73 16 13 H 0.06 1.63 6.69 -51.93 -0.35 1.28 16 14 N -0.81 -18.23 8.01 -6.65 -0.05 -18.29 16 15 C -0.52 -13.66 8.28 -34.44 -0.29 -13.94 16 16 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 17 C 0.09 2.43 5.39 -17.82 -0.10 2.34 16 18 N -0.85 -23.89 12.77 55.43 0.71 -23.18 16 19 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.12 2.07 6.20 -52.49 -0.33 1.75 16 29 H 0.30 6.01 9.06 -39.29 -0.36 5.66 16 30 H 0.32 6.77 7.28 -39.29 -0.29 6.49 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -30.70 283.40 -7.19 -37.89 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -2.97 Total: 6.32 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.89 Total: -10.99 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.81 Total: -53.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -1.40 Total: -0.47 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.70 -7.19 -37.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.548 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds