Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39869 * 125.44912 * 2 1 4 4 C 1.30300 * 110.08871 * 179.73003 * 3 2 1 5 5 Cl 1.73604 * 126.11726 * 180.02562 * 4 3 2 6 6 C 1.46013 * 107.76533 * 0.37767 * 4 3 2 7 7 C 1.37050 * 125.44915 * 179.97438 * 2 1 3 8 8 C 1.39245 * 133.85229 * 359.97438 * 7 2 1 9 9 C 1.36626 * 119.85245 * 180.02562 * 8 7 2 10 10 C 1.38923 * 120.81670 * 0.02562 * 9 8 7 11 11 C 1.36504 * 120.62210 * 359.96354 * 10 9 8 12 12 C 1.50703 * 120.17944 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46750 * 219.99442 * 12 11 10 14 14 N 1.46895 * 109.47052 * 339.99281 * 12 11 10 15 15 C 1.50698 * 109.47105 * 99.99269 * 12 11 10 16 16 H 1.07996 * 120.00498 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99740 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99913 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47074 * 89.99958 * 19 17 15 21 21 H 1.48501 * 109.47009 * 210.00072 * 19 17 15 22 22 H 1.48498 * 109.47105 * 330.00198 * 19 17 15 23 23 H 1.09002 * 109.46771 * 270.02421 * 1 2 3 24 24 H 1.08996 * 109.47289 * 30.02076 * 1 2 3 25 25 H 1.09000 * 109.47070 * 150.02522 * 1 2 3 26 26 H 1.08005 * 120.07131 * 0.02562 * 8 7 2 27 27 H 1.07999 * 119.59129 * 180.02562 * 9 8 7 28 28 H 1.07998 * 119.68782 * 179.97438 * 10 9 8 29 29 H 1.00898 * 111.00047 * 296.04625 * 14 12 11 30 30 H 1.00896 * 111.00013 * 59.99788 * 14 12 11 31 31 H 0.97001 * 120.00098 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5326 0.7943 0.0058 5 17 4.8908 1.8755 0.0087 6 6 3.5939 -0.6646 0.0008 7 6 2.2598 -1.1164 0.0005 8 6 2.0013 -2.4847 0.0016 9 6 3.0395 -3.3729 0.0023 10 6 4.3559 -2.9291 0.0026 11 6 4.6395 -1.5938 0.0014 12 6 6.0712 -1.1234 0.0011 13 1 6.1704 -0.2614 0.6608 14 7 6.9425 -2.2064 0.4761 15 6 6.4716 -0.7337 -1.3984 16 1 5.7605 -0.8178 -2.2068 17 6 7.7457 -0.2688 -1.6467 18 7 8.6113 -0.1649 -0.6620 19 14 8.2419 0.2150 -3.3814 20 1 7.9425 1.6531 -3.5990 21 1 9.6966 -0.0210 -3.5641 22 1 7.4810 -0.6026 -4.3601 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 0.9824 -2.8430 0.0018 27 1 2.8341 -4.4332 0.0027 28 1 5.1625 -3.6472 0.0037 29 1 6.7365 -2.4419 1.4353 30 1 6.8684 -3.0176 -0.1193 31 1 9.5077 0.1619 -0.8367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = 73.745166 kcal Electronic energy + Delta-G solvation = -17800.608179 eV Core-core repulsion = 14915.749535 eV Total energy + Delta-G solvation = -2884.858644 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27064 -38.76318 -37.72886 -36.07114 -34.18499 -33.39548 -30.98345 -30.38503 -27.96728 -27.19701 -24.69713 -23.23684 -22.77270 -20.70485 -18.44568 -18.07566 -17.83433 -16.61885 -16.54173 -16.24123 -16.00039 -15.72026 -14.93663 -14.61746 -14.25581 -14.11423 -13.59719 -13.42568 -13.21882 -12.94779 -12.79507 -12.67343 -12.39313 -12.22855 -12.15240 -11.72725 -11.33674 -11.15855 -10.54492 -10.42675 -9.59870 -8.89179 -8.64143 -7.88513 -6.05489 -0.03155 0.49489 0.58681 1.29755 1.41934 1.45128 1.52043 1.84586 2.50639 2.91498 3.35456 3.51202 3.68835 4.02927 4.17592 4.41089 4.45751 4.47290 4.51431 4.64085 4.67850 4.85990 5.06393 5.25435 5.40785 5.56853 5.82171 5.86175 5.89439 6.13832 6.29594 6.42427 6.76318 7.20314 7.35076 7.63696 9.14540 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008186 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.808823 B = 3419.694018 C = 4105.289447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.402 5.402 3 N -0.271 5.271 4 C 0.135 3.865 5 Cl 0.025 6.975 6 C -0.194 4.194 7 C 0.124 3.876 8 C -0.158 4.158 9 C -0.048 4.048 10 C -0.186 4.186 11 C -0.019 4.019 12 C 0.254 3.746 13 H 0.031 0.969 14 N -0.820 5.820 15 C -0.511 4.511 16 H 0.033 0.967 17 C 0.049 3.951 18 N -0.874 5.874 19 Si 0.923 3.077 20 H -0.282 1.282 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.131 0.869 29 H 0.312 0.688 30 H 0.325 0.675 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 -4.871 2.397 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.193 5.193 3 N -0.089 5.089 4 C -0.066 4.066 5 Cl 0.053 6.947 6 C -0.203 4.203 7 C 0.009 3.991 8 C -0.179 4.179 9 C -0.069 4.069 10 C -0.205 4.205 11 C -0.024 4.024 12 C 0.144 3.856 13 H 0.049 0.951 14 N -0.348 5.348 15 C -0.550 4.550 16 H 0.051 0.949 17 C -0.154 4.154 18 N -0.511 5.511 19 Si 0.750 3.250 20 H -0.208 1.208 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.181 0.819 27 H 0.185 0.815 28 H 0.149 0.851 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.036 -3.213 2.312 16.517 hybrid contribution 0.486 -0.219 -0.840 0.995 sum -15.550 -3.432 1.472 15.993 Atomic orbital electron populations 1.22182 0.70803 1.05977 1.04606 1.48296 1.06822 0.99517 1.64689 1.76383 1.00818 1.10473 1.21270 1.23998 0.89314 0.90563 1.02772 1.98430 1.37110 1.62751 1.96441 1.19629 0.94542 0.90868 1.15229 1.19161 0.89045 0.91010 0.99866 1.20077 1.01710 0.86889 1.09251 1.21113 0.90800 1.01049 0.93888 1.20762 0.98266 0.94241 1.07257 1.20961 0.97560 0.93325 0.90561 1.17973 0.81447 0.90681 0.95475 0.95137 1.58983 1.60194 1.11529 1.04068 1.20707 0.96874 1.44715 0.92749 0.94886 1.25361 0.96705 0.94984 0.98365 1.70192 1.04686 1.44551 1.31646 0.86132 0.77431 0.78455 0.83002 1.20833 1.20895 1.19848 0.89545 0.88789 0.86813 0.81882 0.81484 0.85141 0.87631 0.86102 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 11.40 127.77 1.46 3.27 16 2 N -0.40 -12.49 4.05 -361.04 -1.46 -13.95 16 3 N -0.27 -10.39 12.40 -45.93 -0.57 -10.96 16 4 C 0.13 5.74 8.06 86.94 0.70 6.44 16 5 Cl 0.02 1.09 26.91 -2.72 -0.07 1.01 16 6 C -0.19 -8.08 6.15 -20.23 -0.12 -8.20 16 7 C 0.12 4.14 6.87 39.21 0.27 4.41 16 8 C -0.16 -4.00 9.97 22.13 0.22 -3.78 16 9 C -0.05 -1.24 9.96 22.06 0.22 -1.02 16 10 C -0.19 -6.31 9.20 22.03 0.20 -6.11 16 11 C -0.02 -0.81 5.01 -19.87 -0.10 -0.91 16 12 C 0.25 12.49 2.29 43.42 0.10 12.59 16 13 H 0.03 1.69 6.69 -2.39 -0.02 1.67 16 14 N -0.82 -37.45 8.01 -174.97 -1.40 -38.86 16 15 C -0.51 -27.81 8.28 25.60 0.21 -27.60 16 16 H 0.03 1.87 7.74 -2.91 -0.02 1.85 16 17 C 0.05 2.74 5.39 84.66 0.46 3.20 16 18 N -0.87 -50.68 12.77 21.45 0.27 -50.41 16 19 Si 0.92 44.42 29.54 68.60 2.03 46.45 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 23 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 27 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.13 4.13 6.20 -2.91 -0.02 4.11 16 29 H 0.31 12.70 9.06 -89.70 -0.81 11.89 16 30 H 0.33 13.84 7.28 -89.70 -0.65 13.19 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.86 283.40 2.13 -66.73 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.28 Total: 17.69 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 3.61 Total: -17.71 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.16 Total: -114.18 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: 1.09 SS G_CDS: -0.07 Total: 1.01 kcal Total: -68.86 2.13 -66.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.478 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds