Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48503 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46831 * 299.99820 * 3 2 1 6 6 H 1.48496 * 109.47240 * 59.99590 * 3 2 1 7 7 C 1.37873 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47014 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47196 * 305.00137 * 10 9 7 12 12 N 1.46908 * 109.47128 * 65.00008 * 10 9 7 13 13 C 1.50698 * 109.47245 * 184.99932 * 10 9 7 14 14 C 1.38404 * 120.15412 * 280.00233 * 13 10 9 15 15 C 1.37618 * 120.37961 * 179.97438 * 14 13 10 16 16 C 1.40075 * 120.65018 * 359.97438 * 15 14 13 17 17 O 1.34486 * 127.96236 * 180.02562 * 16 15 14 18 18 C 1.32216 * 117.12924 * 179.97438 * 17 16 15 19 19 O 1.21624 * 125.08138 * 179.97438 * 18 17 16 20 20 S 1.75779 * 109.83864 * 0.02562 * 18 17 16 21 21 C 1.38681 * 118.57221 * 0.02562 * 16 15 14 22 22 C 1.37855 * 120.14970 * 99.81740 * 13 10 9 23 23 H 0.97000 * 120.00103 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47251 * 60.00016 * 9 7 2 25 25 H 1.09004 * 109.47329 * 299.99909 * 9 7 2 26 26 H 1.00899 * 110.99907 * 296.04766 * 12 10 9 27 27 H 1.00898 * 110.99744 * 59.99705 * 12 10 9 28 28 H 1.08000 * 119.81063 * 0.02562 * 14 13 10 29 29 H 1.08006 * 119.67361 * 180.02562 * 15 14 13 30 30 H 1.07996 * 119.88172 * 359.92199 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5551 -0.8413 12 7 3.0084 -3.6538 1.2558 13 6 1.4959 -4.9636 -0.1233 14 6 0.8923 -5.5267 0.9876 15 6 0.2064 -6.7149 0.8797 16 6 0.1071 -7.3727 -0.3529 17 8 -0.5217 -8.5300 -0.6247 18 6 -0.4806 -8.9595 -1.8745 19 8 -0.9972 -9.9835 -2.2792 20 16 0.4336 -7.8300 -2.8636 21 6 0.7150 -6.8011 -1.4606 22 6 1.4052 -5.5969 -1.3444 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 3.5701 -2.8191 1.3321 27 1 2.3961 -3.7516 2.0518 28 1 0.9593 -5.0304 1.9445 29 1 -0.2607 -7.1439 1.7540 30 1 1.8715 -5.1580 -2.2140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -36.851619 kcal Electronic energy + Delta-G solvation = -16933.005938 eV Core-core repulsion = 14013.102413 eV Total energy + Delta-G solvation = -2919.903525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13213 -39.26215 -37.96327 -35.30031 -32.59667 -31.31659 -29.96364 -28.13848 -26.06604 -24.74807 -23.01046 -22.30238 -20.25671 -19.83632 -17.49189 -17.40813 -17.07642 -16.48569 -15.81320 -15.24234 -14.73830 -14.40266 -14.16240 -13.80231 -13.57054 -13.05240 -12.74906 -12.67791 -12.26197 -12.11773 -11.52387 -11.23321 -11.00958 -10.74620 -10.53842 -10.46612 -10.32015 -10.01993 -9.32876 -8.71645 -8.55339 -8.24245 -7.88699 -6.20320 -4.25873 0.57284 0.80685 0.98307 1.27190 1.62032 2.14785 3.18670 3.27715 3.29850 3.49042 4.27796 4.30318 4.82002 5.04328 5.14931 5.16144 5.25571 5.46082 5.65103 5.75874 6.00457 6.16382 6.36123 6.48649 6.54906 6.62806 6.85683 7.28242 7.39413 7.71793 7.82614 8.03047 8.15453 8.80684 9.40639 10.90177 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004202 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.998462 B = 6661.592580 C = 6877.394824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.059 0.941 9 C -0.001 4.001 10 C 0.125 3.875 11 H 0.083 0.917 12 N -0.839 5.839 13 C -0.038 4.038 14 C -0.063 4.063 15 C -0.091 4.091 16 C 0.069 3.931 17 O -0.250 6.250 18 C 0.470 3.530 19 O -0.417 6.417 20 S 0.011 5.989 21 C -0.179 4.179 22 C -0.048 4.048 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.020 0.980 26 H 0.351 0.649 27 H 0.329 0.671 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -11.773 0.039 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.039 4.039 10 C 0.013 3.987 11 H 0.101 0.899 12 N -0.368 5.368 13 C -0.041 4.041 14 C -0.082 4.082 15 C -0.111 4.111 16 C 0.020 3.980 17 O -0.162 6.162 18 C 0.205 3.795 19 O -0.305 6.305 20 S 0.249 5.751 21 C -0.292 4.292 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.165 0.835 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.028 -12.969 -1.641 13.229 hybrid contribution -0.608 1.846 1.267 2.320 sum 1.419 -11.124 -0.374 11.220 Atomic orbital electron populations 1.69968 1.06140 1.26872 1.49755 1.25011 0.94823 0.99407 0.94845 0.86519 0.80107 0.83577 0.77718 1.19589 1.20930 1.20963 1.21143 0.92972 0.90606 1.52025 0.92298 1.19835 0.94347 0.91562 0.98161 1.20591 0.94788 0.89662 0.93620 0.89892 1.59266 1.27790 1.46285 1.03508 1.20221 0.95798 0.96244 0.91793 1.20867 0.94384 0.93175 0.99793 1.20317 1.01851 0.95462 0.93483 1.18932 0.98107 0.84873 0.96040 1.83137 1.65192 1.36580 1.31290 1.24362 0.83502 0.89535 0.82149 1.91020 1.46765 1.23350 1.69385 1.86290 1.59198 1.19134 1.10465 1.22418 1.09457 1.03050 0.94313 1.20319 0.97026 0.90941 0.98750 0.92804 0.96010 0.96168 0.83465 0.85883 0.83789 0.84087 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -13.18 8.55 -34.44 -0.29 -13.48 16 8 H 0.06 1.41 7.15 -52.49 -0.38 1.04 16 9 C 0.00 -0.01 4.60 -27.88 -0.13 -0.14 16 10 C 0.12 2.17 2.99 -68.86 -0.21 1.97 16 11 H 0.08 1.47 8.01 -51.93 -0.42 1.06 16 12 N -0.84 -13.25 9.02 -5.65 -0.05 -13.30 16 13 C -0.04 -0.58 4.95 -104.70 -0.52 -1.09 16 14 C -0.06 -0.84 9.27 -39.75 -0.37 -1.21 16 15 C -0.09 -1.14 10.06 -39.12 -0.39 -1.53 16 16 C 0.07 0.96 7.06 -38.73 -0.27 0.69 16 17 O -0.25 -3.59 10.05 -14.11 -0.14 -3.73 16 18 C 0.47 6.78 8.92 101.05 0.90 7.68 16 19 O -0.42 -6.75 18.05 -19.16 -0.35 -7.10 16 20 S 0.01 0.14 23.38 -107.50 -2.51 -2.38 16 21 C -0.18 -2.50 6.45 -39.03 -0.25 -2.75 16 22 C -0.05 -0.69 9.69 -39.33 -0.38 -1.07 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.35 5.78 7.90 -39.29 -0.31 5.47 16 27 H 0.33 4.80 7.36 -39.29 -0.29 4.51 16 28 H 0.14 1.71 6.67 -52.49 -0.35 1.36 16 29 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.14 1.83 8.04 -52.49 -0.42 1.41 16 LS Contribution 280.41 15.07 4.23 4.23 Total: -1.00 -28.00 280.41 -7.69 -35.69 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -2.57 Total: 5.07 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.01 Total: -9.41 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.69 Total: -37.44 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.49 Total: -10.82 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.51 Total: -2.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.00 -7.69 -35.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.162 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds