Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48503 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46831 * 299.99820 * 3 2 1 6 6 H 1.48496 * 109.47240 * 59.99590 * 3 2 1 7 7 C 1.37873 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47014 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47196 * 305.00137 * 10 9 7 12 12 N 1.46908 * 109.47128 * 65.00008 * 10 9 7 13 13 C 1.50698 * 109.47245 * 184.99932 * 10 9 7 14 14 C 1.38404 * 120.15412 * 280.00233 * 13 10 9 15 15 C 1.37618 * 120.37961 * 179.97438 * 14 13 10 16 16 C 1.40075 * 120.65018 * 359.97438 * 15 14 13 17 17 O 1.34486 * 127.96236 * 180.02562 * 16 15 14 18 18 C 1.32216 * 117.12924 * 179.97438 * 17 16 15 19 19 O 1.21624 * 125.08138 * 179.97438 * 18 17 16 20 20 S 1.75779 * 109.83864 * 0.02562 * 18 17 16 21 21 C 1.38681 * 118.57221 * 0.02562 * 16 15 14 22 22 C 1.37855 * 120.14970 * 99.81740 * 13 10 9 23 23 H 0.97000 * 120.00103 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47251 * 60.00016 * 9 7 2 25 25 H 1.09004 * 109.47329 * 299.99909 * 9 7 2 26 26 H 1.00899 * 110.99907 * 296.04766 * 12 10 9 27 27 H 1.00898 * 110.99744 * 59.99705 * 12 10 9 28 28 H 1.08000 * 119.81063 * 0.02562 * 14 13 10 29 29 H 1.08006 * 119.67361 * 180.02562 * 15 14 13 30 30 H 1.07996 * 119.88172 * 359.92199 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5551 -0.8413 12 7 3.0084 -3.6538 1.2558 13 6 1.4959 -4.9636 -0.1233 14 6 0.8923 -5.5267 0.9876 15 6 0.2064 -6.7149 0.8797 16 6 0.1071 -7.3727 -0.3529 17 8 -0.5217 -8.5300 -0.6247 18 6 -0.4806 -8.9595 -1.8745 19 8 -0.9972 -9.9835 -2.2792 20 16 0.4336 -7.8300 -2.8636 21 6 0.7150 -6.8011 -1.4606 22 6 1.4052 -5.5969 -1.3444 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 3.5701 -2.8191 1.3321 27 1 2.3961 -3.7516 2.0518 28 1 0.9593 -5.0304 1.9445 29 1 -0.2607 -7.1439 1.7540 30 1 1.8715 -5.1580 -2.2140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -53.278130 kcal Electronic energy + Delta-G solvation = -16933.718245 eV Core-core repulsion = 14013.102413 eV Total energy + Delta-G solvation = -2920.615832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.24433 -40.41829 -39.16025 -36.73458 -34.45560 -32.38820 -31.14156 -29.86741 -27.25018 -26.25315 -24.33978 -23.57592 -21.64522 -20.93352 -18.79239 -18.62362 -18.53450 -17.66693 -17.19121 -16.59479 -16.46202 -15.59029 -15.23615 -15.02262 -14.77227 -14.50501 -14.22958 -14.08355 -13.76502 -13.39828 -13.09386 -12.79779 -12.40200 -12.34578 -11.97143 -11.88015 -11.66841 -11.32222 -11.15225 -10.59597 -9.82888 -9.36714 -9.22970 -8.19914 -6.30699 -0.52818 -0.31956 -0.09203 0.19111 0.49638 1.04466 1.41237 1.44548 1.54836 2.36253 2.43333 3.14975 3.22113 3.62611 3.97086 4.08689 4.15735 4.20794 4.50708 4.66279 4.78135 4.87203 4.97147 5.31041 5.37061 5.40026 5.42736 5.64101 5.77784 5.78740 6.17853 6.41597 6.76405 6.86710 7.39832 8.91053 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004202 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.998462 B = 6661.592580 C = 6877.394824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.007 3.993 10 C 0.141 3.859 11 H 0.079 0.921 12 N -0.828 5.828 13 C -0.056 4.056 14 C -0.063 4.063 15 C -0.081 4.081 16 C 0.063 3.937 17 O -0.253 6.253 18 C 0.465 3.535 19 O -0.441 6.441 20 S 0.051 5.949 21 C -0.191 4.191 22 C -0.052 4.052 23 H 0.261 0.739 24 H -0.010 1.010 25 H 0.002 0.998 26 H 0.349 0.651 27 H 0.338 0.662 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -12.063 0.526 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.086 0.914 9 C -0.032 4.032 10 C 0.029 3.971 11 H 0.097 0.903 12 N -0.357 5.357 13 C -0.059 4.059 14 C -0.082 4.082 15 C -0.101 4.101 16 C 0.014 3.986 17 O -0.165 6.165 18 C 0.201 3.799 19 O -0.331 6.331 20 S 0.291 5.709 21 C -0.305 4.305 22 C -0.074 4.074 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.020 0.980 26 H 0.162 0.838 27 H 0.151 0.849 28 H 0.177 0.823 29 H 0.190 0.810 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.059 -13.263 -1.146 13.660 hybrid contribution -0.921 1.901 1.112 2.387 sum 2.138 -11.363 -0.035 11.562 Atomic orbital electron populations 1.70097 1.07781 1.27550 1.51652 1.25854 0.95516 1.03022 0.94886 0.85504 0.79453 0.79417 0.77289 1.18175 1.21285 1.20899 1.21598 0.93629 0.91609 1.50274 0.91368 1.19725 0.94640 0.93148 0.95669 1.20250 0.93550 0.89046 0.94296 0.90261 1.59261 1.27410 1.45838 1.03223 1.20080 0.96936 0.95858 0.93008 1.21060 0.93879 0.93439 0.99854 1.20617 1.00784 0.94639 0.94017 1.19197 0.97995 0.84767 0.96606 1.83119 1.65174 1.36709 1.31477 1.24571 0.83468 0.89544 0.82345 1.91008 1.47830 1.24372 1.69925 1.86179 1.58109 1.17651 1.08997 1.22540 1.09618 1.03173 0.95180 1.20386 0.97107 0.91120 0.98809 0.92985 0.99149 0.98003 0.83783 0.84934 0.82299 0.80997 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -26.40 8.55 25.60 0.22 -26.18 16 8 H 0.07 3.18 7.15 -2.91 -0.02 3.16 16 9 C 0.01 0.31 4.60 29.85 0.14 0.45 16 10 C 0.14 4.79 2.99 44.17 0.13 4.92 16 11 H 0.08 2.75 8.01 -2.39 -0.02 2.73 16 12 N -0.83 -24.88 9.02 -171.79 -1.55 -26.43 16 13 C -0.06 -1.65 4.95 -19.92 -0.10 -1.75 16 14 C -0.06 -1.57 9.27 22.16 0.21 -1.36 16 15 C -0.08 -1.82 10.06 22.57 0.23 -1.59 16 16 C 0.06 1.64 7.06 22.82 0.16 1.80 16 17 O -0.25 -6.87 10.05 37.33 0.38 -6.50 16 18 C 0.47 12.91 8.92 113.37 1.01 13.92 16 19 O -0.44 -13.99 18.05 19.24 0.35 -13.65 16 20 S 0.05 1.25 23.38 -56.49 -1.32 -0.07 16 21 C -0.19 -5.07 6.45 22.63 0.15 -4.93 16 22 C -0.05 -1.43 9.69 22.43 0.22 -1.22 16 23 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.35 10.92 7.90 -89.69 -0.71 10.21 16 27 H 0.34 9.27 7.36 -89.70 -0.66 8.61 16 28 H 0.16 3.42 6.67 -2.91 -0.02 3.40 16 29 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.15 3.73 8.04 -2.91 -0.02 3.70 16 Total: -1.00 -59.35 280.41 2.82 -56.53 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.16 Total: 14.83 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 2.82 Total: -15.19 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.27 Total: -78.99 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.72 Total: -20.14 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -59.35 2.82 -56.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.254 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds