Wall clock time and date at job start Mon Mar 30 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38417 * 120.15142 * 79.72151 * 13 10 9 15 15 C 1.37611 * 120.37528 * 179.71760 * 14 13 10 16 16 C 1.40081 * 120.65010 * 0.56498 * 15 14 13 17 17 O 1.34487 * 127.96105 * 179.71976 * 16 15 14 18 18 C 1.32220 * 117.12872 * 179.97438 * 17 16 15 19 19 O 1.21629 * 125.08195 * 179.97438 * 18 17 16 20 20 S 1.75782 * 109.83625 * 359.97438 * 18 17 16 21 21 C 1.38680 * 118.57448 * 359.71700 * 16 15 14 22 22 C 1.37852 * 120.15255 * 259.99663 * 13 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.07999 * 119.80964 * 359.97438 * 14 13 10 29 29 H 1.07992 * 119.67616 * 180.28153 * 15 14 13 30 30 H 1.07997 * 119.87698 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5904 -3.1773 -0.8317 12 7 3.6277 -3.2908 1.2658 13 6 5.5239 -2.6387 -0.1068 14 6 6.3087 -2.3896 1.0059 15 6 7.6811 -2.3961 0.9050 16 6 8.3056 -2.6425 -0.3244 17 8 9.6234 -2.6783 -0.5904 18 6 9.9800 -2.9330 -1.8379 19 8 11.1269 -2.9987 -2.2376 20 16 8.5488 -3.1624 -2.8324 21 6 7.5113 -2.8854 -1.4350 22 6 6.1229 -2.8830 -1.3241 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.0152 -2.8079 2.0625 27 1 2.6236 -3.3597 1.3379 28 1 5.8413 -2.1932 1.9595 29 1 8.2825 -2.2049 1.7813 30 1 5.5133 -3.0737 -2.1950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154395.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:22 Heat of formation + Delta-G solvation = -32.956422 kcal Electronic energy + Delta-G solvation = -17001.964134 eV Core-core repulsion = 14082.229517 eV Total energy + Delta-G solvation = -2919.734617 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22075 -39.36602 -38.05547 -35.41909 -32.56137 -31.42239 -30.06648 -28.75597 -26.17379 -24.77607 -23.00072 -22.19561 -20.21169 -19.92160 -17.56958 -17.49182 -17.42127 -16.60110 -15.98888 -15.35268 -14.62683 -14.40111 -14.24914 -13.86069 -13.68029 -13.28463 -12.96196 -12.80115 -12.45083 -12.15779 -11.81534 -11.40752 -11.04641 -10.73217 -10.62543 -10.52217 -10.25400 -9.94127 -9.43210 -8.80649 -8.72391 -8.33207 -8.01893 -6.24063 -4.25262 0.49255 0.70485 0.87796 1.18559 1.53220 2.06048 3.17107 3.25999 3.27149 3.37438 4.19336 4.27429 4.70356 4.93774 5.04064 5.08866 5.14903 5.37933 5.55466 5.64845 5.88280 6.04480 6.19959 6.35318 6.43452 6.48670 6.74792 6.85163 7.03049 7.52519 7.69992 7.99624 8.28032 8.77592 9.37286 10.88303 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.004695 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.895828 B = 5962.557635 C = 6160.155195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.038 4.038 10 C 0.136 3.864 11 H 0.089 0.911 12 N -0.838 5.838 13 C -0.043 4.043 14 C -0.064 4.064 15 C -0.092 4.092 16 C 0.071 3.929 17 O -0.250 6.250 18 C 0.470 3.530 19 O -0.415 6.415 20 S 0.013 5.987 21 C -0.180 4.180 22 C -0.047 4.047 23 H 0.265 0.735 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.329 0.671 27 H 0.357 0.643 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -5.052 0.049 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.077 4.077 10 C 0.024 3.976 11 H 0.107 0.893 12 N -0.368 5.368 13 C -0.046 4.046 14 C -0.084 4.084 15 C -0.111 4.111 16 C 0.022 3.978 17 O -0.162 6.162 18 C 0.204 3.796 19 O -0.303 6.303 20 S 0.252 5.748 21 C -0.293 4.293 22 C -0.069 4.069 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.141 0.859 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.871 -5.862 -1.622 16.067 hybrid contribution 0.059 2.212 1.259 2.546 sum 14.931 -3.650 -0.363 15.375 Atomic orbital electron populations 1.69895 1.06289 1.27192 1.49925 1.24989 0.94681 0.99159 0.94149 0.86819 0.80266 0.83709 0.78707 1.20174 1.21257 1.19111 1.20987 0.88775 0.94650 1.52344 0.90618 1.20335 0.97908 0.92285 0.97176 1.20356 0.86692 0.96291 0.94253 0.89334 1.59244 1.18105 1.56248 1.03170 1.20242 0.97525 0.94956 0.91889 1.20888 0.91265 0.96464 0.99746 1.20323 0.94425 1.02787 0.93593 1.18945 0.77671 1.05123 0.96021 1.83146 1.25449 1.76084 1.31531 1.24376 0.94144 0.78921 0.82154 1.91027 1.19590 1.50198 1.69518 1.86331 0.97967 1.80078 1.10430 1.22443 0.99156 1.13284 0.94462 1.20345 0.89803 0.97966 0.98816 0.92475 0.96443 0.96274 0.85949 0.82859 0.83727 0.84016 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.96 55.43 0.77 -24.98 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.30 27.47 -169.99 -4.67 15.63 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -13.33 9.10 -34.44 -0.31 -13.64 16 8 H 0.08 2.03 7.39 -52.49 -0.39 1.64 16 9 C -0.04 -0.79 3.67 -27.88 -0.10 -0.89 16 10 C 0.14 2.26 2.99 -68.86 -0.21 2.05 16 11 H 0.09 1.53 8.01 -51.93 -0.42 1.11 16 12 N -0.84 -12.97 9.03 -5.65 -0.05 -13.02 16 13 C -0.04 -0.62 4.95 -104.70 -0.52 -1.14 16 14 C -0.06 -0.79 9.27 -39.74 -0.37 -1.16 16 15 C -0.09 -1.05 10.06 -39.12 -0.39 -1.45 16 16 C 0.07 0.93 7.06 -38.73 -0.27 0.66 16 17 O -0.25 -3.41 10.05 -14.12 -0.14 -3.55 16 18 C 0.47 6.47 8.92 101.05 0.90 7.37 16 19 O -0.42 -6.49 18.05 -19.17 -0.35 -6.84 16 20 S 0.01 0.16 23.38 -107.50 -2.51 -2.35 16 21 C -0.18 -2.36 6.45 -39.03 -0.25 -2.61 16 22 C -0.05 -0.63 9.69 -39.33 -0.38 -1.01 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.37 7.58 -51.93 -0.39 -0.03 16 25 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 26 H 0.33 4.59 7.36 -39.29 -0.29 4.30 16 27 H 0.36 6.00 7.90 -39.29 -0.31 5.68 16 28 H 0.15 1.56 6.68 -52.49 -0.35 1.21 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.72 8.03 -52.49 -0.42 1.30 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -28.39 276.82 -7.31 -35.70 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.53 Total: 5.18 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.00 Total: -9.96 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.72 Total: -38.00 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.49 Total: -10.38 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.51 Total: -2.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.39 -7.31 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154395.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.748 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds