Wall clock time and date at job start Mon Mar 30 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38417 * 120.15142 * 79.72151 * 13 10 9 15 15 C 1.37611 * 120.37528 * 179.71760 * 14 13 10 16 16 C 1.40081 * 120.65010 * 0.56498 * 15 14 13 17 17 O 1.34487 * 127.96105 * 179.71976 * 16 15 14 18 18 C 1.32220 * 117.12872 * 179.97438 * 17 16 15 19 19 O 1.21629 * 125.08195 * 179.97438 * 18 17 16 20 20 S 1.75782 * 109.83625 * 359.97438 * 18 17 16 21 21 C 1.38680 * 118.57448 * 359.71700 * 16 15 14 22 22 C 1.37852 * 120.15255 * 259.99663 * 13 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.07999 * 119.80964 * 359.97438 * 14 13 10 29 29 H 1.07992 * 119.67616 * 180.28153 * 15 14 13 30 30 H 1.07997 * 119.87698 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5904 -3.1773 -0.8317 12 7 3.6277 -3.2908 1.2658 13 6 5.5239 -2.6387 -0.1068 14 6 6.3087 -2.3896 1.0059 15 6 7.6811 -2.3961 0.9050 16 6 8.3056 -2.6425 -0.3244 17 8 9.6234 -2.6783 -0.5904 18 6 9.9800 -2.9330 -1.8379 19 8 11.1269 -2.9987 -2.2376 20 16 8.5488 -3.1624 -2.8324 21 6 7.5113 -2.8854 -1.4350 22 6 6.1229 -2.8830 -1.3241 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.0152 -2.8079 2.0625 27 1 2.6236 -3.3597 1.3379 28 1 5.8413 -2.1932 1.9595 29 1 8.2825 -2.2049 1.7813 30 1 5.5133 -3.0737 -2.1950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154395.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:22 Heat of formation + Delta-G solvation = -50.431447 kcal Electronic energy + Delta-G solvation = -17002.721908 eV Core-core repulsion = 14082.229517 eV Total energy + Delta-G solvation = -2920.492391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.25195 -40.44214 -39.18098 -36.77251 -34.46335 -32.39968 -31.18006 -30.43231 -27.27087 -26.15614 -24.17901 -23.47463 -21.57315 -20.94174 -19.18777 -18.64448 -18.54260 -17.69667 -17.24875 -16.52571 -16.36113 -15.58519 -15.26831 -15.11993 -14.83313 -14.78488 -14.32733 -14.04231 -13.84599 -13.47172 -13.23488 -12.81757 -12.46038 -12.13918 -12.02256 -11.73362 -11.67255 -11.33144 -11.27726 -10.77981 -9.84676 -9.39904 -9.26067 -8.28534 -6.32295 -0.53588 -0.33442 -0.10175 0.19027 0.48728 1.04174 1.35526 1.38425 1.46974 2.34910 2.36368 3.07542 3.21061 3.58137 3.95587 4.04966 4.14569 4.18682 4.45124 4.65808 4.74260 4.78244 4.91275 5.19391 5.26818 5.30567 5.39303 5.55320 5.62327 5.77402 6.23337 6.38230 6.73963 6.76700 7.33157 8.86982 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.004695 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.895828 B = 5962.557635 C = 6160.155195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.523 4.523 8 H 0.046 0.954 9 C -0.035 4.035 10 C 0.146 3.854 11 H 0.077 0.923 12 N -0.831 5.831 13 C -0.058 4.058 14 C -0.062 4.062 15 C -0.080 4.080 16 C 0.065 3.935 17 O -0.253 6.253 18 C 0.465 3.535 19 O -0.442 6.442 20 S 0.050 5.950 21 C -0.192 4.192 22 C -0.050 4.050 23 H 0.264 0.736 24 H 0.016 0.984 25 H 0.027 0.973 26 H 0.340 0.660 27 H 0.348 0.652 28 H 0.163 0.837 29 H 0.173 0.827 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.952 -4.685 0.672 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.168 1.168 7 C -0.561 4.561 8 H 0.064 0.936 9 C -0.074 4.074 10 C 0.034 3.966 11 H 0.095 0.905 12 N -0.360 5.360 13 C -0.060 4.060 14 C -0.081 4.081 15 C -0.100 4.100 16 C 0.016 3.984 17 O -0.165 6.165 18 C 0.201 3.799 19 O -0.332 6.332 20 S 0.289 5.711 21 C -0.306 4.306 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.153 0.847 27 H 0.161 0.839 28 H 0.181 0.819 29 H 0.191 0.809 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.793 -5.509 -0.990 17.702 hybrid contribution -0.561 1.999 1.057 2.330 sum 16.233 -3.511 0.068 16.608 Atomic orbital electron populations 1.70044 1.08159 1.27950 1.52514 1.25848 0.95338 1.02958 0.94398 0.85839 0.79742 0.79300 0.78801 1.20041 1.21604 1.16764 1.21340 0.91350 0.93272 1.50130 0.93581 1.20292 0.94632 0.95239 0.97227 1.20087 0.88529 0.93577 0.94382 0.90515 1.59226 1.17408 1.56068 1.03321 1.20014 0.95962 0.96970 0.93090 1.21096 0.91557 0.95663 0.99810 1.20629 0.94226 1.01075 0.94022 1.19236 0.77398 1.05133 0.96632 1.83128 1.25836 1.75915 1.31636 1.24582 0.94322 0.78650 0.82373 1.91015 1.20673 1.51361 1.70121 1.86249 0.96298 1.79372 1.09151 1.22545 0.99177 1.13656 0.95172 1.20398 0.90070 0.97822 0.98928 0.92662 0.96558 0.95470 0.84687 0.83896 0.81921 0.80927 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.61 13.96 21.45 0.30 -55.31 16 2 C 0.01 0.65 5.47 84.66 0.46 1.12 16 3 Si 0.94 41.18 27.47 68.60 1.88 43.06 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 7 C -0.52 -26.36 9.10 25.60 0.23 -26.13 16 8 H 0.05 2.54 7.39 -2.91 -0.02 2.52 16 9 C -0.03 -1.38 3.67 29.85 0.11 -1.27 16 10 C 0.15 4.66 2.99 44.16 0.13 4.79 16 11 H 0.08 2.61 8.01 -2.39 -0.02 2.59 16 12 N -0.83 -24.52 9.03 -171.80 -1.55 -26.07 16 13 C -0.06 -1.51 4.95 -19.91 -0.10 -1.60 16 14 C -0.06 -1.32 9.27 22.16 0.21 -1.11 16 15 C -0.08 -1.55 10.06 22.57 0.23 -1.32 16 16 C 0.07 1.51 7.06 22.82 0.16 1.67 16 17 O -0.25 -6.34 10.05 37.29 0.37 -5.97 16 18 C 0.47 12.08 8.92 113.37 1.01 13.09 16 19 O -0.44 -13.37 18.05 19.23 0.35 -13.03 16 20 S 0.05 1.12 23.38 -56.49 -1.32 -0.20 16 21 C -0.19 -4.59 6.45 22.63 0.15 -4.44 16 22 C -0.05 -1.23 9.69 22.43 0.22 -1.02 16 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.02 0.65 7.58 -2.38 -0.02 0.63 16 25 H 0.03 1.04 7.19 -2.39 -0.02 1.02 16 26 H 0.34 8.68 7.36 -89.69 -0.66 8.02 16 27 H 0.35 11.56 7.90 -89.69 -0.71 10.85 16 28 H 0.16 2.84 6.68 -2.91 -0.02 2.83 16 29 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.15 3.36 8.03 -2.91 -0.02 3.34 16 Total: -1.00 -60.79 276.82 2.62 -58.17 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.22 Total: 15.56 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 2.81 Total: -16.22 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.25 Total: -81.38 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.72 Total: -18.99 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.88 Total: 43.06 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.32 Total: -0.20 kcal Total: -60.79 2.62 -58.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154395.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.737 kcal (2) G-P(sol) polarization free energy of solvation -60.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds