Wall clock time and date at job start Mon Mar 30 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.37660 * 119.67781 * 99.99515 * 13 10 9 15 15 C 1.38363 * 120.37658 * 179.97438 * 14 13 10 16 16 C 1.37892 * 119.69899 * 0.02562 * 15 14 13 17 17 C 1.39237 * 120.24610 * 0.02562 * 16 15 14 18 18 S 1.76234 * 130.56682 * 179.97438 * 17 16 15 19 19 C 1.75777 * 90.59107 * 180.02562 * 18 17 16 20 20 O 1.21627 * 125.07908 * 180.02562 * 19 18 17 21 21 O 1.32225 * 109.84446 * 0.02562 * 19 18 17 22 22 C 1.34490 * 117.12783 * 359.69168 * 21 19 18 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.00904 * 110.99944 * 63.94834 * 12 10 9 28 28 H 1.07997 * 119.80870 * 359.97438 * 14 13 10 29 29 H 1.08003 * 120.14883 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.87685 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2584 -5.7231 -0.9990 15 6 0.5724 -6.9207 -0.9019 16 6 0.1245 -7.3537 0.3283 17 6 0.3599 -6.5904 1.4688 18 16 -0.0822 -6.8763 3.1507 19 6 0.6813 -5.3664 3.6270 20 8 0.7312 -4.9364 4.7637 21 8 1.1934 -4.7677 2.5651 22 6 1.0510 -5.3907 1.3817 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.3959 -3.7518 -2.0507 27 1 3.5700 -2.8193 -1.3310 28 1 1.6097 -5.3821 -1.9616 29 1 0.3885 -7.5138 -1.7856 30 1 -0.4117 -8.2879 0.4074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:28 Heat of formation + Delta-G solvation = -32.252616 kcal Electronic energy + Delta-G solvation = -17459.832029 eV Core-core repulsion = 14540.127932 eV Total energy + Delta-G solvation = -2919.704098 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.98735 -39.09821 -37.59027 -35.65999 -32.62366 -30.61368 -30.26713 -28.13331 -25.79511 -24.81383 -22.98262 -22.08034 -20.48591 -19.33672 -17.42548 -17.16728 -16.77947 -16.64124 -15.98248 -15.07087 -14.70359 -14.59230 -13.84609 -13.63910 -13.32711 -13.13054 -12.71330 -12.34328 -12.21624 -12.06560 -11.59994 -11.15418 -11.04603 -10.68542 -10.50307 -10.34676 -10.20406 -9.92014 -9.27747 -8.63713 -8.47678 -8.15802 -7.89291 -6.13390 -4.18480 0.70340 0.86994 1.05816 1.34069 1.79047 2.38996 3.24276 3.31975 3.34824 3.51939 4.30389 4.36932 4.88604 5.04939 5.16264 5.21499 5.22739 5.40038 5.68094 5.86176 6.08585 6.30225 6.43517 6.53186 6.57932 6.71059 7.02935 7.34460 7.44282 7.77618 7.85576 8.05538 8.21386 8.87060 9.47175 10.97356 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.006284 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.597261 B = 4454.643513 C = 5325.523667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.003 3.997 10 C 0.122 3.878 11 H 0.086 0.914 12 N -0.839 5.839 13 C -0.023 4.023 14 C -0.072 4.072 15 C -0.113 4.113 16 C -0.066 4.066 17 C -0.181 4.181 18 S -0.008 6.008 19 C 0.475 3.525 20 O -0.410 6.410 21 O -0.233 6.233 22 C 0.093 3.907 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.330 0.670 27 H 0.352 0.648 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -15.171 -1.817 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.035 4.035 10 C 0.011 3.989 11 H 0.104 0.896 12 N -0.368 5.368 13 C -0.025 4.025 14 C -0.091 4.091 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.295 4.295 18 S 0.230 5.770 19 C 0.209 3.791 20 O -0.297 6.297 21 O -0.144 6.144 22 C 0.043 3.957 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.062 -16.228 -0.164 16.229 hybrid contribution 0.267 2.727 -0.680 2.823 sum 0.205 -13.501 -0.844 13.529 Atomic orbital electron populations 1.69962 1.06145 1.26908 1.49758 1.25011 0.94847 0.99402 0.94868 0.86552 0.79907 0.83224 0.78110 1.20581 1.21148 1.19734 1.21090 0.92899 0.90574 1.52002 0.92372 1.19779 0.94250 0.91478 0.98014 1.20562 0.95040 0.89715 0.93611 0.89605 1.59310 1.27677 1.46363 1.03488 1.19616 0.97749 0.97830 0.87345 1.20898 0.96527 0.93447 0.98268 1.21125 0.98375 0.96824 0.96941 1.20297 0.99886 0.98951 0.89719 1.22435 1.08985 0.99960 0.98133 1.86077 1.65348 1.25665 0.99867 1.24275 0.80710 0.87849 0.86305 1.91019 1.57000 1.66436 1.15205 1.83286 1.67575 1.48830 1.14717 1.18805 1.01186 0.91021 0.84652 0.92798 0.96057 0.96255 0.85808 0.83340 0.83483 0.84348 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.05 8.55 -34.44 -0.29 -14.35 16 8 H 0.06 1.49 7.14 -52.49 -0.37 1.11 16 9 C 0.00 0.08 4.60 -27.88 -0.13 -0.05 16 10 C 0.12 2.39 2.88 -68.86 -0.20 2.19 16 11 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 12 N -0.84 -14.03 8.66 -5.65 -0.05 -14.08 16 13 C -0.02 -0.39 5.12 -104.16 -0.53 -0.92 16 14 C -0.07 -0.96 9.21 -39.75 -0.37 -1.33 16 15 C -0.11 -1.22 10.06 -39.66 -0.40 -1.62 16 16 C -0.07 -0.76 10.06 -39.34 -0.40 -1.16 16 17 C -0.18 -2.61 6.45 -39.03 -0.25 -2.86 16 18 S -0.01 -0.11 23.38 -107.50 -2.51 -2.62 16 19 C 0.48 8.39 8.92 101.05 0.90 9.29 16 20 O -0.41 -8.02 18.05 -19.17 -0.35 -8.36 16 21 O -0.23 -4.47 9.92 -14.14 -0.14 -4.62 16 22 C 0.09 1.61 6.83 -38.73 -0.26 1.35 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.33 5.01 7.25 -39.29 -0.29 4.72 16 27 H 0.35 6.13 7.90 -39.29 -0.31 5.82 16 28 H 0.15 1.74 6.18 -52.49 -0.32 1.41 16 29 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 279.60 15.07 4.21 4.21 Total: -1.00 -30.32 279.60 -7.69 -38.01 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.54 Total: 4.57 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.03 Total: -7.86 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.69 Total: -39.44 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.49 Total: -12.98 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.51 Total: -2.62 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.32 -7.69 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.762 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds