Wall clock time and date at job start Mon Mar 30 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.37660 * 119.67781 * 99.99515 * 13 10 9 15 15 C 1.38363 * 120.37658 * 179.97438 * 14 13 10 16 16 C 1.37892 * 119.69899 * 0.02562 * 15 14 13 17 17 C 1.39237 * 120.24610 * 0.02562 * 16 15 14 18 18 S 1.76234 * 130.56682 * 179.97438 * 17 16 15 19 19 C 1.75777 * 90.59107 * 180.02562 * 18 17 16 20 20 O 1.21627 * 125.07908 * 180.02562 * 19 18 17 21 21 O 1.32225 * 109.84446 * 0.02562 * 19 18 17 22 22 C 1.34490 * 117.12783 * 359.69168 * 21 19 18 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.00904 * 110.99944 * 63.94834 * 12 10 9 28 28 H 1.07997 * 119.80870 * 359.97438 * 14 13 10 29 29 H 1.08003 * 120.14883 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.87685 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2584 -5.7231 -0.9990 15 6 0.5724 -6.9207 -0.9019 16 6 0.1245 -7.3537 0.3283 17 6 0.3599 -6.5904 1.4688 18 16 -0.0822 -6.8763 3.1507 19 6 0.6813 -5.3664 3.6270 20 8 0.7312 -4.9364 4.7637 21 8 1.1934 -4.7677 2.5651 22 6 1.0510 -5.3907 1.3817 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.3959 -3.7518 -2.0507 27 1 3.5700 -2.8193 -1.3310 28 1 1.6097 -5.3821 -1.9616 29 1 0.3885 -7.5138 -1.7856 30 1 -0.4117 -8.2879 0.4074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:28 Heat of formation + Delta-G solvation = -52.128182 kcal Electronic energy + Delta-G solvation = -17460.693898 eV Core-core repulsion = 14540.127932 eV Total energy + Delta-G solvation = -2920.565967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.27079 -40.34111 -38.92587 -37.15312 -34.62322 -31.73936 -31.48218 -29.97968 -27.07565 -26.45348 -24.41162 -23.42924 -21.95139 -20.60492 -18.94600 -18.51902 -18.42299 -17.86974 -17.30969 -16.65970 -16.34262 -15.90363 -15.09428 -14.94537 -14.76352 -14.46421 -14.43242 -14.01034 -13.54298 -13.36180 -13.10650 -12.83138 -12.61499 -12.24517 -12.18365 -11.95089 -11.68563 -11.27972 -11.18357 -10.65678 -9.80963 -9.40372 -9.24701 -8.26633 -6.38785 -0.54054 -0.28848 -0.05353 0.19849 0.53105 1.15809 1.36178 1.38408 1.48670 2.34621 2.46599 3.06917 3.18732 3.80702 3.91725 4.01704 4.18238 4.27781 4.35384 4.70508 4.82404 4.88808 5.17814 5.25511 5.36849 5.37580 5.49363 5.53996 5.69228 5.86458 6.09273 6.29747 6.67869 6.76880 7.31411 8.84624 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.006284 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.597261 B = 4454.643513 C = 5325.523667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.015 3.985 10 C 0.138 3.862 11 H 0.060 0.940 12 N -0.820 5.820 13 C -0.057 4.057 14 C -0.068 4.068 15 C -0.093 4.093 16 C -0.050 4.050 17 C -0.196 4.196 18 S 0.072 5.928 19 C 0.451 3.549 20 O -0.451 6.451 21 O -0.268 6.268 22 C 0.058 3.942 23 H 0.263 0.737 24 H -0.023 1.023 25 H 0.003 0.997 26 H 0.342 0.658 27 H 0.349 0.651 28 H 0.164 0.836 29 H 0.190 0.810 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -17.547 -3.856 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.024 4.024 10 C 0.026 3.974 11 H 0.078 0.922 12 N -0.350 5.350 13 C -0.059 4.059 14 C -0.087 4.087 15 C -0.112 4.112 16 C -0.072 4.072 17 C -0.310 4.310 18 S 0.312 5.688 19 C 0.188 3.812 20 O -0.342 6.342 21 O -0.180 6.180 22 C 0.009 3.991 23 H 0.072 0.928 24 H -0.005 1.005 25 H 0.021 0.979 26 H 0.155 0.845 27 H 0.162 0.838 28 H 0.181 0.819 29 H 0.207 0.793 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.048 -18.639 -2.242 18.774 hybrid contribution 0.214 3.322 -0.132 3.331 sum 0.166 -15.317 -2.374 15.501 Atomic orbital electron populations 1.70102 1.07877 1.27780 1.51245 1.25948 0.95673 1.03347 0.94575 0.85457 0.78484 0.78457 0.78723 1.19018 1.21404 1.19042 1.21537 0.93494 0.91687 1.50949 0.91619 1.19617 0.94445 0.93411 0.94930 1.20094 0.93541 0.89849 0.93939 0.92222 1.59287 1.27068 1.45823 1.02835 1.19545 0.99854 0.97718 0.88809 1.21236 0.95990 0.94008 0.97462 1.21680 0.95623 0.95471 0.98448 1.20932 0.98202 0.99491 0.88551 1.22805 1.09032 0.99482 0.99676 1.85683 1.63312 1.21143 0.98693 1.24944 0.81079 0.89437 0.85773 1.90970 1.58648 1.68249 1.16324 1.83197 1.68242 1.50651 1.15904 1.19103 1.03288 0.92620 0.84083 0.92821 1.00493 0.97895 0.84491 0.83764 0.81868 0.79319 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -29.62 8.55 25.60 0.22 -29.41 16 8 H 0.07 3.42 7.14 -2.91 -0.02 3.40 16 9 C 0.01 0.75 4.60 29.85 0.14 0.89 16 10 C 0.14 5.60 2.88 44.17 0.13 5.72 16 11 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 12 N -0.82 -27.21 8.66 -171.79 -1.49 -28.70 16 13 C -0.06 -1.94 5.12 -19.57 -0.10 -2.04 16 14 C -0.07 -1.64 9.21 22.16 0.20 -1.43 16 15 C -0.09 -1.53 10.06 22.22 0.22 -1.31 16 16 C -0.05 -0.91 10.06 22.43 0.23 -0.68 16 17 C -0.20 -5.27 6.45 22.63 0.15 -5.13 16 18 S 0.07 1.90 23.38 -56.49 -1.32 0.58 16 19 C 0.45 16.80 8.92 113.37 1.01 17.81 16 20 O -0.45 -18.88 18.05 19.23 0.35 -18.53 16 21 O -0.27 -11.05 9.92 37.22 0.37 -10.68 16 22 C 0.06 2.04 6.83 22.82 0.16 2.20 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.34 9.99 7.25 -89.70 -0.65 9.33 16 27 H 0.35 12.09 7.90 -89.69 -0.71 11.38 16 28 H 0.16 3.33 6.18 -2.91 -0.02 3.31 16 29 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -71.12 279.60 2.88 -68.24 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.15 Total: 11.93 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 2.81 Total: -12.74 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.20 Total: -84.85 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: 0.72 Total: -29.21 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -71.12 2.88 -68.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds