Wall clock time and date at job start Mon Mar 30 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48504 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47325 * 300.00387 * 3 2 1 6 6 H 1.48503 * 109.46804 * 60.00903 * 3 2 1 7 7 C 1.37882 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46608 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47372 * 304.99922 * 10 9 7 12 12 N 1.46899 * 109.47030 * 65.00591 * 10 9 7 13 13 C 1.50704 * 109.46583 * 184.99857 * 10 9 7 14 14 C 1.36622 * 120.07656 * 264.97451 * 13 10 9 15 15 C 1.38928 * 120.81458 * 180.02562 * 14 13 10 16 16 C 1.36504 * 120.62532 * 359.97438 * 15 14 13 17 17 C 1.39892 * 119.63847 * 0.02562 * 16 15 14 18 18 C 1.46011 * 134.03425 * 179.97438 * 17 16 15 19 19 Cl 1.73591 * 126.12019 * 0.06305 * 18 17 16 20 20 N 1.30302 * 107.75980 * 179.77013 * 18 17 16 21 21 N 1.39872 * 110.09022 * 0.41549 * 20 18 17 22 22 H 0.97001 * 125.45365 * 179.84576 * 21 20 18 23 23 C 1.37050 * 109.09807 * 359.56997 * 21 20 18 24 24 H 0.97009 * 119.99479 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47036 * 60.00474 * 9 7 2 26 26 H 1.08992 * 109.47196 * 300.00208 * 9 7 2 27 27 H 1.00898 * 111.00351 * 59.99533 * 12 10 9 28 28 H 1.00900 * 110.99596 * 183.95544 * 12 10 9 29 29 H 1.07996 * 119.59422 * 0.02562 * 14 13 10 30 30 H 1.08004 * 119.68719 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.18549 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3962 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9292 -3.5553 -0.8423 12 7 3.0081 -3.6541 1.2547 13 6 1.4955 -4.9637 -0.1243 14 6 1.1666 -5.6736 0.9957 15 6 0.4763 -6.8754 0.8993 16 6 0.1115 -7.3721 -0.3187 17 6 0.4368 -6.6637 -1.4803 18 6 0.2116 -6.8919 -2.9048 19 17 -0.6102 -8.2506 -3.6061 20 7 0.7325 -5.8900 -3.5550 21 7 1.3137 -4.9862 -2.6596 22 1 1.7655 -4.1635 -2.9045 23 6 1.1373 -5.4458 -1.3806 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5570 0.8896 27 1 2.3958 -3.7518 2.0507 28 1 3.7158 -4.3733 1.2523 29 1 1.4466 -5.2959 1.9679 30 1 0.2259 -7.4218 1.7966 31 1 -0.4253 -8.3068 -0.3853 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:30 Heat of formation + Delta-G solvation = 73.611176 kcal Electronic energy + Delta-G solvation = -17272.365904 eV Core-core repulsion = 14387.501449 eV Total energy + Delta-G solvation = -2884.864454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29977 -37.81953 -36.85675 -35.34636 -32.60148 -31.58116 -29.76609 -29.03070 -28.33845 -24.65858 -22.71959 -22.14043 -21.62307 -19.84634 -17.78759 -16.73007 -16.23199 -15.49977 -15.24447 -15.08650 -15.00054 -14.40423 -13.86774 -13.76960 -13.04337 -12.56359 -12.18731 -11.96158 -11.77708 -11.69215 -11.33732 -11.14199 -10.86905 -10.70007 -10.58126 -10.42735 -9.97926 -9.48878 -9.16055 -8.62381 -8.38083 -8.10352 -7.74108 -5.98888 -3.99010 0.95402 1.38503 1.57688 2.32897 3.02353 3.32485 3.40395 3.45406 3.84651 4.47365 4.49012 4.80423 5.03918 5.07899 5.17808 5.38626 5.39238 5.54509 5.77110 5.94748 6.03079 6.24831 6.45690 6.56129 6.72829 6.88121 7.28896 7.39892 7.47811 7.60009 7.84833 8.00003 8.05872 8.42122 9.07790 9.64120 11.12528 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.005089 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.009689 B = 5501.261485 C = 6104.872949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.052 3.948 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.134 3.866 11 H 0.073 0.927 12 N -0.819 5.819 13 C -0.111 4.111 14 C -0.082 4.082 15 C -0.144 4.144 16 C -0.055 4.055 17 C -0.166 4.166 18 C 0.134 3.866 19 Cl 0.012 6.988 20 N -0.232 5.232 21 N -0.481 5.481 22 H 0.451 0.549 23 C 0.149 3.851 24 H 0.259 0.741 25 H 0.017 0.983 26 H 0.019 0.981 27 H 0.337 0.663 28 H 0.324 0.676 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -16.366 -1.241 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.000 4.000 10 C 0.022 3.978 11 H 0.091 0.909 12 N -0.347 5.347 13 C -0.117 4.117 14 C -0.103 4.103 15 C -0.164 4.164 16 C -0.076 4.076 17 C -0.175 4.175 18 C -0.069 4.069 19 Cl 0.040 6.960 20 N -0.051 5.051 21 N -0.200 5.200 22 H 0.299 0.701 23 C 0.032 3.968 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.151 0.849 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.051 -15.090 -2.670 15.360 hybrid contribution -0.131 -0.016 0.609 0.623 sum 0.920 -15.105 -2.060 15.273 Atomic orbital electron populations 1.69982 1.06056 1.26413 1.51565 1.25028 0.94792 0.99265 0.95720 0.86526 0.80196 0.83826 0.77378 1.19683 1.21324 1.21167 1.21172 0.93403 0.89921 1.49178 0.91815 1.19147 0.92749 0.90662 0.97448 1.20739 0.94569 0.89956 0.92520 0.90894 1.58777 1.17741 1.54363 1.03821 1.20278 1.02548 0.99704 0.89210 1.20607 0.97504 0.94386 0.97823 1.20613 1.01486 0.97083 0.97194 1.20196 0.98295 0.98841 0.90247 1.19429 1.08386 0.98013 0.91679 1.23634 1.00729 0.92343 0.90182 1.98380 1.75467 1.37921 1.84222 1.76464 1.11696 1.00050 1.16856 1.45790 1.50969 1.21961 1.01245 0.70146 1.18556 0.97777 0.93439 0.87004 0.93187 0.96522 0.96228 0.84888 0.86438 0.85388 0.85595 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.50 -13.51 8.84 -34.44 -0.30 -13.81 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.04 0.90 4.60 -27.88 -0.13 0.77 16 10 C 0.13 2.52 2.94 -68.86 -0.20 2.32 16 11 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 12 N -0.82 -13.85 8.54 -5.65 -0.05 -13.90 16 13 C -0.11 -1.85 5.03 -104.83 -0.53 -2.37 16 14 C -0.08 -1.17 9.21 -39.91 -0.37 -1.54 16 15 C -0.14 -1.80 9.97 -39.95 -0.40 -2.19 16 16 C -0.06 -0.72 10.06 -39.59 -0.40 -1.12 16 17 C -0.17 -2.57 6.37 -105.18 -0.67 -3.24 16 18 C 0.13 2.02 8.09 -15.09 -0.12 1.90 16 19 Cl 0.01 0.15 29.33 -51.86 -1.52 -1.37 16 20 N -0.23 -3.79 12.55 34.13 0.43 -3.36 16 21 N -0.48 -7.89 7.37 32.36 0.24 -7.65 16 22 H 0.45 6.82 8.96 -182.77 -1.64 5.18 16 23 C 0.15 2.50 7.03 -84.17 -0.59 1.91 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.34 5.36 7.20 -39.29 -0.28 5.07 16 28 H 0.32 4.54 9.06 -39.29 -0.36 4.19 16 29 H 0.13 1.60 6.23 -52.49 -0.33 1.28 16 30 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -30.80 287.55 -8.92 -39.71 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.26 Total: 7.63 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.81 Total: -16.01 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 1.35 Total: -50.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.52 Total: -1.37 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.80 -8.92 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.325 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds